PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G002900.1 | ||||||||
Common Name | PHAVU_007G002900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | RAV | ||||||||
Protein Properties | Length: 321aa MW: 36796.5 Da PI: 6.2506 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 7.7e-09 | 36 | 82 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV ++g W A+I+ + r++lg+f ++ eAa a++ a kl+ Phvul.007G002900.1 36 KFKGVV-PQQNGNWGAQIYA------NhHRIWLGTFKSEREAAMAYDSASIKLR 82 789996.666899****999......44**********99*********99997 PP | |||||||
2 | B3 | 82 | 5.6e-26 | 158 | 251 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ltpsdv+k++rlv+pkk+a ++ g++++ ++++ ++d+ r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ Phvul.007G002900.1 158 FQKELTPSDVGKLNRLVIPKKHAVSYfppvceiaeGHEEHgsVDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTI 248 99*******************************984444422457889999***************************************9 PP EEE CS B3 81 vFk 83 F Phvul.007G002900.1 249 AFF 251 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-20 | 35 | 93 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-14 | 36 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-17 | 36 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 36 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.463 | 36 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-29 | 155 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-26 | 156 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.05E-23 | 157 | 252 | No hit | No description |
PROSITE profile | PS50863 | 11.011 | 158 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-23 | 158 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-18 | 158 | 262 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MNRNKESYSD CCGEINSAAF DAMQEENRAA GSLFQKFKGV VPQQNGNWGA QIYANHHRIW 60 LGTFKSEREA AMAYDSASIK LRSGESHRNF PWDDQTVQEP EFQSHYSTEA MLSMIRDGTY 120 ASHFATFLTT RKTQQGVVAK HVTLKGDEEE KLCCTLLFQK ELTPSDVGKL NRLVIPKKHA 180 VSYFPPVCEI AEGHEEHGSV DVEVAFYDRL MRLWKFRYCY WKSSQSYVFT RGWNRFVKDK 240 KLKAKDTIAF FMCEPVDWRK GGEGEAFGLI DVIYNSDDER GLKCFGELVC SEEEEDTKEE 300 TIEKDLNAQK GLRLFGVFIK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-26 | 157 | 260 | 7 | 112 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-26 | 157 | 260 | 7 | 112 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G002900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142618.1 | 0.0 | hypothetical protein PHAVU_007G002900g | ||||
Swissprot | Q9C688 | 8e-95 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | V7B9R1 | 0.0 | V7B9R1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142618.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 5e-97 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G002900.1 |
Entrez Gene | 18624424 |