PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G220900.1
Common NamePHAVU_006G220900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 681aa    MW: 77891.8 Da    PI: 7.9333
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G220900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-2163156190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+e+Ak+ GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnH
  Phvul.006G220900.1  63 EFYSEFAKRSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKTSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNH 153
                         6**************9998877356667999*************9999999********************9988888************* PP

                FAR1  88 ela 90 
                         el 
  Phvul.006G220900.1 154 ELL 156
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1863156IPR004330FAR1 DNA binding domain
PfamPF105511.7E-20279370IPR018289MULE transposase domain
PROSITE profilePS509669.211554590IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-6556588IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-5565592IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MMSEDAGSML VVYDDVSDQR SLSLDDASSA EESPDETRLS LESTHDAIPY IGQRFATHDA  60
AYEFYSEFAK RSGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPAKTST ESKPQRNRKS  120
SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDADKNRILM  180
FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK  240
EKDPNFKFEY TLDANNRLEN IAWSYASSIQ WFEIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CTLLRDETVR SFSWALKAFL GFMNGKAPQT ILTDQNICLK EALCTEMPTT  360
KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFELGWRE MVCSFGLHSN  420
RHMVNLYSSR SLWALPFLRS HFLAGMTSTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQTGEQQ TMQQNLQNVC LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYASFSIED  540
GFLVRHHTKA EGGRKVYWGP QEGIISCSCH QFEFTGILCR HSLRVLSTGN CFQIPDRYLP  600
IRWRRISMPS TKLLQSPPNE HAERVKLLQN MVSSLMTESA KSKERLDIAT EQVSILLSRI  660
REQPISLQGG RDISSINRNL *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G220900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148586.10.0hypothetical protein PHAVU_006G220900g
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLV7BU540.0V7BU54_PHAVU; Uncharacterized protein
STRINGXP_007148586.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]