PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G217800.1
Common NamePHAVU_006G217800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 508aa    MW: 53132.9 Da    PI: 7.2244
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G217800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.67.4e-411292393119
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++    
  Phvul.006G217800.1 129 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSFRSSGSTLSAP---- 215
                         5699****************************************************************9986555555555533333.... PP

                 TCP  93 saakskksqksaasalnlakesrakar 119
                            +sk++++  + al+la++  ++a 
  Phvul.006G217800.1 216 ---PSKSAPHTFHGALALAHHPYEEAF 239
                         ...333333333333444443333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-39133258IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496134188IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MELSDLQNNK QNTTTNTNNS TNTKTNTVRG GAAAGGAGGG GAHPNHHHQQ SSSSHLQLPF  60
DARTNPSSTF LSSSTSSSST NSSSSSSSAS ASSHIIDASL AIATISDDSA NKTQQLSTAA  120
AAASPAANPP KRSTKDRHTK VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ  180
AEPAIIAATG TGTIPANFST LNVSFRSSGS TLSAPPSKSA PHTFHGALAL AHHPYEEAFQ  240
HTALLGFHAH AHQQHQQHQL LSADQIAEAL PSGGGDSGDG YLRKRYREDL FKDDNINTQS  300
QNESGDGSSP KTPNLQLPKQ QAQQQTEAGP GLLRPTNLLP ATAMWAVAPA PASGPPGSTI  360
WMLPVTAASS ASAAAVAAAS ASASSGGGGS TASSETPMWP FPQSGFMPRF NLPSALEFQG  420
ARGGSLQLGS MLMPQQPSQH LGLAMSDSNF GMLAALNAYT RPGFNINSDN HHHHHHHHHP  480
LDHQNQHQHQ HQPQPSESGE DDPNSSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G217800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148546.10.0hypothetical protein PHAVU_006G217800g
RefseqXP_007148547.10.0hypothetical protein PHAVU_006G217800g
TrEMBLV7BU130.0V7BU13_PHAVU; Uncharacterized protein
STRINGXP_007148546.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-73TCP family protein