PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G217800.1 | ||||||||
Common Name | PHAVU_006G217800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 508aa MW: 53132.9 Da PI: 7.2244 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.6 | 7.4e-41 | 129 | 239 | 3 | 119 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Phvul.006G217800.1 129 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSFRSSGSTLSAP---- 215 5699****************************************************************9986555555555533333.... PP TCP 93 saakskksqksaasalnlakesrakar 119 +sk++++ + al+la++ ++a Phvul.006G217800.1 216 ---PSKSAPHTFHGALALAHHPYEEAF 239 ...333333333333444443333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-39 | 133 | 258 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 134 | 188 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MELSDLQNNK QNTTTNTNNS TNTKTNTVRG GAAAGGAGGG GAHPNHHHQQ SSSSHLQLPF 60 DARTNPSSTF LSSSTSSSST NSSSSSSSAS ASSHIIDASL AIATISDDSA NKTQQLSTAA 120 AAASPAANPP KRSTKDRHTK VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ 180 AEPAIIAATG TGTIPANFST LNVSFRSSGS TLSAPPSKSA PHTFHGALAL AHHPYEEAFQ 240 HTALLGFHAH AHQQHQQHQL LSADQIAEAL PSGGGDSGDG YLRKRYREDL FKDDNINTQS 300 QNESGDGSSP KTPNLQLPKQ QAQQQTEAGP GLLRPTNLLP ATAMWAVAPA PASGPPGSTI 360 WMLPVTAASS ASAAAVAAAS ASASSGGGGS TASSETPMWP FPQSGFMPRF NLPSALEFQG 420 ARGGSLQLGS MLMPQQPSQH LGLAMSDSNF GMLAALNAYT RPGFNINSDN HHHHHHHHHP 480 LDHQNQHQHQ HQPQPSESGE DDPNSSQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G217800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148546.1 | 0.0 | hypothetical protein PHAVU_006G217800g | ||||
Refseq | XP_007148547.1 | 0.0 | hypothetical protein PHAVU_006G217800g | ||||
TrEMBL | V7BU13 | 0.0 | V7BU13_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148546.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-73 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G217800.1 |
Entrez Gene | 18629553 |