PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G208600.1 | ||||||||
Common Name | PHAVU_006G208600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 190aa MW: 21779.3 Da PI: 4.9335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124 | 1.2e-38 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y+++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg +++ Phvul.006G208600.1 8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLEVYQYDPWELDGRALAEGNQWYYYSRR--------TPNRVTGNGYWKPTGMEEP 89 79*************************999.99**************977778899*****997........579**************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++ vg+kk +vf+ g+a +g kt+W+m+eyrl Phvul.006G208600.1 90 VVSSsNSKRVGMKKYFVFHVGEAATGIKTNWIMQEYRL 127 *99878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-50 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.27 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-23 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGDTNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDVI PDLEVYQYDP WELDGRALAE 60 GNQWYYYSRR TPNRVTGNGY WKPTGMEEPV VSSSNSKRVG MKKYFVFHVG EAATGIKTNW 120 IMQEYRLSDS ASSTRSSKRK PQPKADYNKW VICRVYERNG EDDNGTELSC LDEVFLSLDD 180 DLDEISLPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-43 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-43 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-43 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-43 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-43 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-43 | 4 | 159 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-43 | 4 | 159 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G208600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661918 | 1e-154 | EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148437.1 | 1e-141 | hypothetical protein PHAVU_006G208600g | ||||
Swissprot | Q8GWK6 | 6e-84 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | V7BV34 | 1e-140 | V7BV34_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148437.1 | 1e-140 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 8e-78 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G208600.1 |
Entrez Gene | 18629459 |
Publications ? help Back to Top | |||
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