PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G202300.1 | ||||||||
Common Name | PHAVU_006G202300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23812.2 Da PI: 9.7286 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.9 | 4.1e-26 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g++KKA+ELS+LCda++a+i++s t kl+ey++ Phvul.006G202300.1 11 KKIENINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVISATSKLFEYAT 61 68***********************************************86 PP | |||||||
2 | K-box | 38.9 | 3.7e-14 | 78 | 171 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +g++ +++ ++ ++ ++ L kei +e+ +l G++L+ L+++eL++Le+ L + ++i + K+e ++++i+ l+ ke el een++L+ Phvul.006G202300.1 78 QGSDISSTAQQLGSESFDMLHKEIVDKTHELSRLNGKELQGLTIQELHKLEELLLRRWTTISKIKDEKITQEINSLKTKEAELTEENQKLK 168 5566777777888889999999999999*************************************************************** PP K-box 96 kkl 98 +kl Phvul.006G202300.1 169 QKL 171 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.964 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-35 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-29 | 3 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.66E-35 | 4 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-11 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.803 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MIMARRKIAM KKIENINARQ VTFSKRRKGL FKKAQELSTL CDAQIALIVI SATSKLFEYA 60 TSSMQQIFER RNRHSGVQGS DISSTAQQLG SESFDMLHKE IVDKTHELSR LNGKELQGLT 120 IQELHKLEEL LLRRWTTISK IKDEKITQEI NSLKTKEAEL TEENQKLKQK LVPEQRQCYE 180 SITSSSSDFP PDNGPSDTSL NLGLRLFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 3 | 82 | 1 | 84 | MEF2C |
5f28_B | 1e-17 | 3 | 82 | 1 | 84 | MEF2C |
5f28_C | 1e-17 | 3 | 82 | 1 | 84 | MEF2C |
5f28_D | 1e-17 | 3 | 82 | 1 | 84 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G202300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148367.1 | 1e-151 | hypothetical protein PHAVU_006G202300g | ||||
Swissprot | Q9FUY6 | 4e-51 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | V7BUW2 | 1e-150 | V7BUW2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148367.1 | 1e-151 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-46 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G202300.1 |
Entrez Gene | 18629396 |
Publications ? help Back to Top | |||
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