PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G202200.1 | ||||||||
Common Name | PHAVU_006G202200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23807.4 Da PI: 10.2117 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.5e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n + rqvtfskR+ g+lKKA ELS LCdae+a+++fs+ gkl++y+s Phvul.006G202200.1 9 KKIVNVTARQVTFSKRKSGLLKKARELSLLCDAEIALMVFSPGGKLFDYAS 59 679999*******************************************86 PP | |||||||
2 | K-box | 48.2 | 4.6e-17 | 87 | 170 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e+ + +a Lkke+e re R+l Ge+L+ Ls+keLq+Le +Le+sl+ + + K + +++ i+ l +k+++l e+n+ L++++ Phvul.006G202200.1 87 EQIRSSHAYLKKELEDRSREMRQLNGEELQGLSFKELQKLEGRLESSLNCVYKAKVQNFIRDINILTQKQNKLMEDNRLLKQRI 170 667778899************************************************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.88 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-28 | 3 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.13E-34 | 3 | 69 | No hit | No description |
Pfam | PF00319 | 1.9E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.597 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-15 | 87 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MVRKKIPIKK IVNVTARQVT FSKRKSGLLK KARELSLLCD AEIALMVFSP GGKLFDYASS 60 SMQKITERHI LRSEFNQDKL DQLPPTEQIR SSHAYLKKEL EDRSREMRQL NGEELQGLSF 120 KELQKLEGRL ESSLNCVYKA KVQNFIRDIN ILTQKQNKLM EDNRLLKQRI SSRNEICSVQ 180 RHEHEQEQSF DTSLTLGLPF PSDSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-20 | 1 | 77 | 1 | 74 | MEF2C |
5f28_B | 7e-20 | 1 | 77 | 1 | 74 | MEF2C |
5f28_C | 7e-20 | 1 | 77 | 1 | 74 | MEF2C |
5f28_D | 7e-20 | 1 | 77 | 1 | 74 | MEF2C |
6byy_A | 9e-20 | 1 | 88 | 1 | 93 | MEF2 CHIMERA |
6byy_B | 9e-20 | 1 | 88 | 1 | 93 | MEF2 CHIMERA |
6byy_C | 9e-20 | 1 | 88 | 1 | 93 | MEF2 CHIMERA |
6byy_D | 9e-20 | 1 | 88 | 1 | 93 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G202200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 3e-70 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148366.1 | 1e-149 | hypothetical protein PHAVU_006G202200g | ||||
Swissprot | Q9FVC1 | 2e-48 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | V7BTI9 | 1e-147 | V7BTI9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148366.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26660 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-51 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G202200.1 |
Entrez Gene | 18629395 |