PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G183400.1
Common NamePHAVU_006G183400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 845aa    MW: 96329.9 Da    PI: 4.3557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G183400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08420439525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffa+ G+C +G++C+F H
  Phvul.006G183400.1 420 ICDFFAK-GWCIRGSSCSFLH 439
                         7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.34E-6415439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587415442IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011416441IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6420439IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MSLPDSPVPD DTETDPSEDE EQVEEETEEE EEEEEEEAEE EVEEEVEEEE GEEEEVEEVD  60
EEEEVEEVEE EEEEVEEVEV EEEEVEVDEE EEVEQEVKGE EEVKEEEGEE ETLEDKKERQ  120
EQKQKEAVEE EKEGQPQQQE KAVEEQKKEQ QRQEEAVEEK EKEQQQQQNE AVEEKKKAQQ  180
QQHEKTVEEK KKEQQLQQEE AMEKEGRQKE EVGEDKGRKD LSLHMESKEQ DKNLGPDSSV  240
AENSDVIPSS SVHCMEENDN MLKISVPSCE ILTSKKEEFH QKYDISSHSK SRENLTSVEN  300
SRSKGLEVDG ENAGSLLQKE THRGYSELGC NSKANLCDDN DIDSGARASK PSSDTGQDMV  360
IGLFPKDCLV EDANGGQNSR NNITQLEMES RDDMKQMLTR TRSLSPSAEN KNRNKRPKII  420
CDFFAKGWCI RGSSCSFLHI KDSVDKTDQE VEADLATVHQ KRKLKVEEGV RENVQRIRMN  480
EQEETPSWHP SQEKQNFKLR DNLFPENRFA FSSTSNYFSP KQDGMATLRN QHMYKGYAST  540
FLSHSPNSRQ EDFPLVSSSR APSYPTGYKS KICSYDWEPS VPFRPSFFIT SMNVSSPGDL  600
YDPLRDSIEI PNIGDGSLKA SLLIQGSNRQ TSTQAPIYGD SAVVGKHMSS LNDDKSSVSS  660
HNKVYETETN KNSVPHEKDY LPTETEITSG TYVNYQNGKI GTGQNTFGVA DNTKKEGDMT  720
EHDTRHHSEG SGHKKKRGDR DKKNHEMDVD FPMDGSMQKE VKALKMLRAA LVDHVKELLK  780
PVWHEGRLSK DEYIMIVRKS VDKVVSSIEP HQIPTIDTAK QYVSSSRVKI AKLVNGYVNK  840
YGKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G183400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148139.10.0hypothetical protein PHAVU_006G183400g
TrEMBLV7BSY50.0V7BSY5_PHAVU; Uncharacterized protein
STRINGXP_007148139.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-31C3H family protein