PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G180700.1 | ||||||||
Common Name | PHAVU_006G180700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | VOZ | ||||||||
Protein Properties | Length: 473aa MW: 52476.4 Da PI: 6.3935 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 435.2 | 9.1e-134 | 198 | 415 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaflgpkcalwdc+rp+qg +w+qdycssfha+lalneg+pg+tpvlrp+gi+lkd+llf+alsak+qgk vgipecegaatakspwn Phvul.006G180700.1 198 PPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHAALALNEGPPGMTPVLRPGGIGLKDNLLFSALSAKAQGKVVGIPECEGAATAKSPWN 288 89***************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 a+elfd+++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp++ fewhlyeyei+++da+al Phvul.006G180700.1 289 APELFDICVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCDACAL 379 ******************************************************************************************* PP VOZ 183 yrlelklvdekksakgk.vskdsladlqkklgrlta 217 yrlelklvd+kks+k++ ++ ds+adlqk++g+l+a Phvul.006G180700.1 380 YRLELKLVDGKKSSKARiITGDSVADLQKHMGSLSA 415 ****************95578************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MKKISKSTCK SASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDVALL EEQVHQMLRE 60 WKAELNEPSP ASSLQQGGSL GSFSTDVYRL LQLCEEEDDA TSPLVAPKPE PNDQTMQAGA 120 RVIVQEGQHE QEFLLLKECK HSAIGVPNMP AHNLDGPALE FHQLEFNKDF DHSFYGGTGF 180 CEEGGGPHIS SYLPSVCPPP SAFLGPKCAL WDCPRPVQGL DWCQDYCSSF HAALALNEGP 240 PGMTPVLRPG GIGLKDNLLF SALSAKAQGK VVGIPECEGA ATAKSPWNAP ELFDICVLEG 300 ETIREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMNEFGGLKR SYYMDPQPLN 360 LFEWHLYEYE ISKCDACALY RLELKLVDGK KSSKARIITG DSVADLQKHM GSLSAEFHSD 420 SNKRSAKGSR TKLGIGGGVY SASNRVALLN APYQYGLTAP YDFVADNTRD YM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G180700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148099.1 | 0.0 | hypothetical protein PHAVU_006G180700g | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | V7BSU1 | 0.0 | V7BSU1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148099.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G180700.1 |
Entrez Gene | 18629176 |
Publications ? help Back to Top | |||
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