PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G166600.1
Common NamePHAVU_006G166600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 512aa    MW: 55647.5 Da    PI: 7.7684
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G166600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.2e-35762362133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssss 69 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       ++++
  Phvul.006G166600.1  76 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLnnpfpdtpkqpsdekrptsgqrgGQPQ 166
                         689*************************************************************998888876666665555555543333 PP

                 TCP  70 a.sec..eaesssssas.nsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                         a        +++  ++s n+s++ + +++a+s+ s++s+ s l+l++      r kar+rar r ++++ ++
  Phvul.006G166600.1 167 AfD-EvdG-DTNFLQQSqNQSQNLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARVRAAKEKGKD 236
                         321.2221.222222111233334555555666666666666666664233566999999999554444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-4077233IPR005333Transcription factor, TCP
PROSITE profilePS5136931.5778136IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.889215233IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEEDEIQAQA VCKFPRVGNG RSEQYQEEEE EGDIRRRGIG GGGGGGGGGG GSDASTNHFQ  60
SSWHHSSRII RVSRASGGKD RHSKVMTSKG LRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK  120
AVEWLINAAS DAISELPSLN NPFPDTPKQP SDEKRPTSGQ RGGQPQAFDE VDGDTNFLQQ  180
SQNQSQNLSL SKSACSSTSE TSKGSGLSLS RSEIRVNRVK ARERARVRAA KEKGKDRDKE  240
KEKEKENESG VAHHHHHHHN VNNPNHMSHT ASFTELLTGG IGSTVTVNPT TTASPNGSSV  300
HQIHEGHDEA NLFHKGRQQQ HWSSTVTPMD YFSPGGLLVG PSSSSARNQH QHQHQHQSSS  360
GQFQLGHALP ISPFSGENHS DQLQHFSFMP DHLNMPAVVT SSSSASQPSG GDNYNLNFSI  420
SSGLAAFNRG TLQSNSPSFL PHLQRFQPLD GSSNLPFFIG APAPSSAPPT IDTNNNNNHH  480
HLQFSPVFDG RLQLCYGDGT RHSDHKGKGK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2383137155Putative transcription factor PCF6
5zkt_B6e-2383137155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G166600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147929.10.0hypothetical protein PHAVU_006G166600g
TrEMBLV7BSC30.0V7BSC3_PHAVU; Uncharacterized protein
STRINGXP_007147929.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2