PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G163300.1
Common NamePHAVU_006G163300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 362aa    MW: 38658.7 Da    PI: 8.5628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G163300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-114974227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        ++  C +++rtG+C +G+rC+F+H++
  Phvul.006G163300.1 49 DETDCTYYLRTGFCGFGSRCRFNHPR 74
                        5679********************96 PP
2zf-CCCH35.91.3e-1195119327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rt tCk+G++Ck++H++
  Phvul.006G163300.1  95 QPVCQYYMRTRTCKFGSSCKYHHPR 119
                         689********************96 PP
3zf-CCCH36.86.5e-12140164226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+++ +tG+Ck+G++CkF+H+
  Phvul.006G163300.1 140 GEKECSYYVKTGQCKFGATCKFHHP 164
                         7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.1E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6334775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-64875IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-492119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.45592120IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-995119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-695118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-497117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718138166IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4144163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEQYGRSSEG SRSDPSPEWA GPGAQTGLEE PMWQLGMGAA EESYPQRPDE TDCTYYLRTG  60
FCGFGSRCRF NHPRDRGTVV GAERTAGEYP ERVGQPVCQY YMRTRTCKFG SSCKYHHPRL  120
AGGAAAPVTL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPVPAGVQ IPAPSPVAPV  180
SPLPVPVPSP LYSTMQPPPG PSSQQIGVLV ARPPMLPGSL VQSPYGPVVL SPAMVPISGW  240
GPYQASGTGA ILPSGTPNVG SAQLYGITQL PSSAAGYPGL YQLPGSLVGP SSSNQKEQAF  300
PERSNQPDYQ YYPKTGEVKV GPSYRYHPPT EMTAPKANVT LSPAGLPLRP GLKLKSVEES  360
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G163300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-158AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147888.10.0hypothetical protein PHAVU_006G163300g
SwissprotQ6NPN31e-124C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLV7BPI60.0V7BPI6_PHAVU; Uncharacterized protein
STRINGXP_007147888.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-122C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]