PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G159700.1
Common NamePHAVU_006G159700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 763aa    MW: 85636.8 Da    PI: 7.1834
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G159700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.71.2e-36105180176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +Cqv+gCe+d+se+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k
  Phvul.006G159700.1 105 RCQVPGCEVDISELKGYHRRHRVCLRCANATTVILHGESKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRK 180
                         6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-28100167IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.701103180IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-33104181IPR004333Transcription factor, SBP-box
PfamPF031102.2E-27106180IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MEPQQSLPPM DDSEDPSSIW DFSYLLDFNI DEDHTNNSLP ISSPFNDAPE IPNDRVRKRD  60
PRLTCSNFLA GHVPCACPEL DAKLEDEGLP GKKRARTARA SSSARCQVPG CEVDISELKG  120
YHRRHRVCLR CANATTVILH GESKRYCQQC GKFHVLSDFD EGKRSCRRKL ERHNTRRRRK  180
PLVDSGCASV VELEAVTQNE ESNYDPEAGK DCSNLSNEIN AVVVLPDHED EPVPILRSAP  240
DAQNVNSDSV VSFPVSGETR VNSGNTSNSP SYCDNKSVYT SMCQTGRISF KLYDWNPAEF  300
PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TSFIAMPDIM WINLRKDSLE YVNKLVAPGK  360
MLSGRGNALV HLNGTIFRVM KDGTSVTKVE VNLQAPRLHY VHPTCFEAGK PMEFVACGSN  420
LLQPKFRLLV SFSGKYLKCE YCVPSPHNWT EENISCAFDN QLYKIYVPHT EESLFGPAFI  480
EVENECGLSN FIPVLIADKE ICSEMKTLQQ KLDSSLLSKQ FRSASGGSIC SSCETFTLSH  540
TSSDLLVDIA WLLKDTTSEN FDRVMTASQI QRYCHLLDFL MCNESTVMLK KILPNLIILT  600
ESMKSNFLIN RTSYVDTRQL LNHIHDAQIA IYQKHQKNGS IITLPEMESL KLEQGCSQDS  660
KIATNSQGIL SRADAKWGVL KNLTSNGRKE RIPLLKREII MNVEELPERY GRGCLGRGFL  720
TPRPAIFVIV SIAVCLGVCV AVLHPGRVTE LAVSVRRCLF NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A7e-43102188288squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166178RRKLERHNTRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G159700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147848.10.0hypothetical protein PHAVU_006G159700g
TrEMBLV7BPE70.0V7BPE7_PHAVU; Uncharacterized protein
STRINGXP_007147848.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7