PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G157300.1 | ||||||||
Common Name | PHAVU_006G157300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 761aa MW: 87890.5 Da PI: 7.6256 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.9 | 4.6e-20 | 43 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+ + +gkw++++++++HnH+l Phvul.006G157300.1 43 QFYTSYANRAGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTGCPAFIRVQINGSGKWVIDHFHKDHNHNL 117 6**************************************8765..............699***************************99 PP | |||||||
2 | FAR1 | 66.8 | 5.6e-21 | 197 | 272 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF vr+ + +sk++g it+r+fvCskeg++++ +r+gC a l++k++ +gkw v++l+++HnH+l Phvul.006G157300.1 197 QFYHAYAARMGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLD 272 6***************************************999..............4899**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.5E-16 | 43 | 117 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 6.5E-17 | 197 | 272 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-27 | 371 | 464 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.348 | 646 | 682 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.4E-9 | 653 | 679 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-6 | 657 | 684 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MIVKEHFVGT ELAMNNAIVE EEIDFSCDPY IGLEFDTADE ALQFYTSYAN RAGFKVRIGQ 60 LYRSRTDGSV SSRRFVCSKE GHQLSSRTGC PAFIRVQING SGKWVIDHFH KDHNHNLEIS 120 GENCTPTLQQ KGGTVVSSLT EFTRRPRKKL LEEVNNESSC PFGIIDFKRL RKEELEGQPK 180 TEPYVGQEFS SPNEAYQFYH AYAARMGFGV RIGQLFRSKN DGLITSRRFV CSKEGFQHPS 240 RVGCGAYLRI KRQPSGKWTV DRLRKDHNHD LDSEKEGRAK GLHASNILND DADNGFVNGD 300 LFRIDNYPVP RGGRQNHIRN EWYSILLEYF QARQTEDTGF FYAVEVDNGN CMSIFWADGR 360 SRYSCSQFGD VLVLDTSYRK TVYLVPFATF VGVNHHKQPV LLGCALVADE SEESFTWLFQ 420 TWLRAMSGRQ PLTVIADQDI AVQKAIAKVF PVTYHRFSLW QIKAKEQENM GLMGDGFTKD 480 YEKCVYQSQT VDEFDATWNV LLNKYGLKDN AWLKEMYEKR ASWVPLYLKG TFFAGIPMNE 540 SLDSFFGALL NAQTPLMEFI PRYERGLERR REEERKEDFN TSNFQPILQT KEAVEEQCRR 600 LYTLAVFKVF QKELLQCFSY LGFKIFEEGG LSRYMVRRCG NDMEKHVVTF NASNLSISCS 660 CQMFEYDGVL CRHVLRVFQI LQLREVPSRY ILHRWTRNAE DGVFPDIDSW SSSQELKNLM 720 LWSLRETASK YIDAGATSIE KYKLAYEILR EGGRKLCWHR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G157300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007147816.1 | 0.0 | hypothetical protein PHAVU_006G157300g | ||||
Swissprot | Q9M8J3 | 0.0 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | V7BRY7 | 0.0 | V7BRY7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007147816.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 0.0 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G157300.1 |
Entrez Gene | 18628936 |
Publications ? help Back to Top | |||
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