PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G140500.1
Common NamePHAVU_006G140500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 692aa    MW: 79834.9 Da    PI: 6.282
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G140500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.3e-2168159190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHe
  Phvul.006G140500.1  68 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHE 157
                         59********************8888.********************9**********************99877789************9 PP

                FAR1  89 la 90 
                         + 
  Phvul.006G140500.1 158 IL 159
                         85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1968159IPR004330FAR1 DNA binding domain
PfamPF105519.2E-17291383IPR018289MULE transposase domain
PROSITE profilePS509669.878563598IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-7569594IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-5573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTSIPSKNLC VRRQQCPCGD WKCYITYEGD SEEGSAAPEL VKEEKASSGA MITPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRISP QLGIYKRDFV CYRSGFAPVK KKPNGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHEILE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKMLEQ EKGIQGGHLP FLERDVRNFV QNRKKVVLEN EALLSEKREN  240
DVLELLEACK VMKEADNEFV YDFTVDGNDK VENVAWSYGD SVNANAMFGD VVYFDTSYRS  300
VTYGLLFGVW FGIDSYGRTI FYGCVLLQDE TPQSFSWALQ TFVRFMRGRC PQTILTDLDP  360
GLKDAILSEF PGTKHVVPQW NILHKVPCWF SPTLGSRYAE FKSEFDALFH IENTEEFELQ  420
WSQMISVFGL GSDKHADLLY TVRESWAQAY VRGYFLARMA TMAYSKSIDA FLKRIFSAHT  480
CLRSFFEQVG ISASFQHQAL KETQFIQLKT CIPIEEHARS VLTPFAFNAL QQELLLSMQY  540
AASEMANGSY IVRHFKRMNG ERLVIWLVED DQIHCSCKEF ESSGILCRHA LRVFVIKNYF  600
QLPDKYFLGR WRRECSLLVN DDDNNQGIGE EWFQEYQSLA ETLFQESSIT KERSEYVRKE  660
LTKELTRILN EVRNLPEADG VCMNMLVSST N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G140500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147626.10.0hypothetical protein PHAVU_006G140500g
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLV7BRE80.0V7BRE8_PHAVU; Uncharacterized protein
STRINGXP_007147626.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]