PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G132600.1

Common Name

PHAVU_006G132600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 667aa MW: 77221.5 Da PI: 7.6849

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G132600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w+v ++ leHnH l Phvul.006G132600.1 60 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHML 143 5899*************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-18	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-30	261	354	IPR018289	MULE transposase domain
Pfam	PF04434	4.9E-5	535	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.52	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MEETSLCCEQ LADGECIEVQ KDEDGALIVL DCQNGFPEGR KEFVAPAVGM EFESYDDAYN 60 YYICYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNHLRK ETRTGCPAMI 120 RMRLVESQRW RVLEVMLEHN HMLGAKHRLV KKMGTGMKRK SLPSSDAEGQ TIKLYRALVI 180 DAGGDGISNS SAREERSFCE FSNKLNLRKG DTQAIYNFLC RMQLTNPNFF YLMDFNDEGH 240 LRNAFWVDAR SRAACGYFGD VIYFDNTYLS NKFEIQLVTF VGINHHGHSV LLGCGLLASE 300 TTESYVWLFR TWVKCMSGCS PQTIITDRCK ALQRAIVEVF PRCRHCFGLS LIMKKLPEKL 360 GGLHNYDALR KALIKAVYET LKVIEFEAAW GFMIQHFGVS DHEWLRSLYE DRVHWAPVFL 420 KDTFFAGMSA ARPGENMTPF FDRYVHKQTP LKEFLDKYEL ALHKKHKEES FADIESRSSS 480 PLLKTRCSFE LQLSRLYTRE MFMKFQLEVE EVYSCFGTTQ LHVDGPIIIF LVKERVLIEG 540 NRREIRDFEV LYSRTVGEVR CICSCFNFYG YLCRHALCVL NFNGVEEIPH RYILSRWKKD 600 YKRLYVPDHS SGTADDTDRI QWSNQLFRSA LQVVEEGILS LDHYNVALQS LEDSLSKVHD 660 VEQRHG*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MEETSLCCEQ LADGECIEVQ KDEDGALIVL DCQNGFPEGR KEFVAPAVGM EFESYDDAYN  60
YYICYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNHLRK ETRTGCPAMI  120
RMRLVESQRW RVLEVMLEHN HMLGAKHRLV KKMGTGMKRK SLPSSDAEGQ TIKLYRALVI  180
DAGGDGISNS SAREERSFCE FSNKLNLRKG DTQAIYNFLC RMQLTNPNFF YLMDFNDEGH  240
LRNAFWVDAR SRAACGYFGD VIYFDNTYLS NKFEIQLVTF VGINHHGHSV LLGCGLLASE  300
TTESYVWLFR TWVKCMSGCS PQTIITDRCK ALQRAIVEVF PRCRHCFGLS LIMKKLPEKL  360
GGLHNYDALR KALIKAVYET LKVIEFEAAW GFMIQHFGVS DHEWLRSLYE DRVHWAPVFL  420
KDTFFAGMSA ARPGENMTPF FDRYVHKQTP LKEFLDKYEL ALHKKHKEES FADIESRSSS  480
PLLKTRCSFE LQLSRLYTRE MFMKFQLEVE EVYSCFGTTQ LHVDGPIIIF LVKERVLIEG  540
NRREIRDFEV LYSRTVGEVR CICSCFNFYG YLCRHALCVL NFNGVEEIPH RYILSRWKKD  600
YKRLYVPDHS SGTADDTDRI QWSNQLFRSA LQVVEEGILS LDHYNVALQS LEDSLSKVHD  660
VEQRHG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G132600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147533.1	0.0	hypothetical protein PHAVU_006G132600g
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	V7BNJ0	0.0	V7BNJ0_PHAVU; Uncharacterized protein
STRING	XP_007147533.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Phvul.006G132600.1
Entrez Gene	18628684

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]