PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G114000.1
Common NamePHAVU_006G114000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 616aa    MW: 67649.1 Da    PI: 5.8783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G114000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13442488455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  Phvul.006G114000.1 442 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 488
                         799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5252237IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-15441492No hitNo description
SuperFamilySSF474591.7E-18441501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-18442501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-17444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKVDAGLGSV AWDEEDKAIV GAVLGGLALE FLTTNSVSNE SVLMAVGSDE GLQNKLSDLV  60
ERPNDSNFSW NYAIFWQLSQ SKSGDWVLSW GDGCCREPNE EEEGALRGKL RLLRVDEEMQ  120
QRMRKVVLQK LHNTFGGSEE DNYAFGLDHV TDTEMFFLAS MYFSFPRGHG VPGTCFVSGK  180
HLWLKSVPDF CVRSSLVKSA GIQTIVMVPT DLGVVELGSV RVLPENFELV QAVKSVFSTQ  240
CSQYPGVNVS AGGNAVFTGL AIGDGNKIDG GVPIPKLFSN PIGNRTGNRT HFREKLAVRK  300
MEDNRPWAGH ALPNGNNLNN NPNVRNGLHV PGWAVNSGVK QGGPVEIFAP RASTSSVVAE  360
LVNGVRQDFR LGNSYQPQRQ VQMQIDFSGA TSRPSHVRPV VVDSELSDVE ASCKEEQPSV  420
LDERKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA  480
IAYINELQAK VKIMEDERER FGSSSKDGSV LEDNSRSENQ NQEKEAPDVD IQAAQDEVTV  540
KVSCPFDTHP VSKVIETLKE AKISVVESKF AAANDTVFHT FVIKSEGSEQ LTKEKLIAVF  600
SKPEPNPLQP LSSVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29436498264Transcription factor MYC2
5gnj_B3e-29436498264Transcription factor MYC2
5gnj_E3e-29436498264Transcription factor MYC2
5gnj_F3e-29436498264Transcription factor MYC2
5gnj_G3e-29436498264Transcription factor MYC2
5gnj_I3e-29436498264Transcription factor MYC2
5gnj_M3e-29436498264Transcription factor MYC2
5gnj_N3e-29436498264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423431RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G114000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147321.10.0hypothetical protein PHAVU_006G114000g
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLV7BQI60.0V7BQI6_PHAVU; Uncharacterized protein
STRINGXP_007147321.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-178bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]