PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G110200.1
Common NamePHAVU_006G110200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 285aa    MW: 32699.5 Da    PI: 4.5455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G110200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2086135255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + +GVr+++ +grW+AeIrdp++   r+r++lg+f+taeeAa  +++a+ +l+g
  Phvul.006G110200.1  86 KLRGVRQRP-WGRWAAEIRDPVK---RTRVWLGTFDTAEEAAMVYDKAAINLRG 135
                         679******.**********755...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3486149IPR001471AP2/ERF domain
PROSITE profilePS5103222.74886143IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2186143IPR016177DNA-binding domain
CDDcd000188.72E-3286142No hitNo description
PfamPF008475.3E-1386135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-2987142IPR001471AP2/ERF domain
PRINTSPR003673.6E-108798IPR001471AP2/ERF domain
PRINTSPR003673.6E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
METILREEKV VTYMHVKHGI LNQTPKIVRI SMMDPYATDD EDEGLVNLPK IKKIVNEIRI  60
VEKKPSTTVS MNQLYKEKTE ERGRRKLRGV RQRPWGRWAA EIRDPVKRTR VWLGTFDTAE  120
EAAMVYDKAA INLRGCNALT NFIMPPTRED SHRDAISSEY GYDESQDSVT GLVENVSDSS  180
KESHLPSPTS VLGLEHEKLE LEEVFQTDGL VIEDPTFEDT FLDSQDFNFE NHFITETNVK  240
QFDDSLSDIS HFLNENFQSC NWDIDSYFNN LSPCSPSPRS EVLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2285151468ATERF1
3gcc_A2e-2285151468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RGRRKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G110200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147274.10.0hypothetical protein PHAVU_006G110200g
TrEMBLV7BQH50.0V7BQH5_PHAVU; Uncharacterized protein
STRINGXP_007147274.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-32cytokinin response factor 4