PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G080000.1
Common NamePHAVU_006G080000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 251aa    MW: 28018.5 Da    PI: 9.1845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G080000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19117166255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +grW AeIrdp     + kr++lg+f taeeAa+ +++a+ kl+g
  Phvul.006G080000.1 117 KFRGVRQRP-WGRWTAEIRDPI----QrKRVWLGTFYTAEEAAAVYDEAAVKLKG 166
                         89*******.**********83....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.4E-477250IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.48E-32117176No hitNo description
PfamPF008479.0E-12117166IPR001471AP2/ERF domain
PROSITE profilePS5103223.459117174IPR001471AP2/ERF domain
SMARTSM003806.3E-36117180IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21117174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-30117175IPR001471AP2/ERF domain
PRINTSPR003677.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003677.5E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNLHHPFNPP TSTTKFYTHP PRKTPQKPQP RHNKLLRVIL TDHDATDSDS SGDDDTPKNP  60
SKHKKVKREI THITISFPFI PQPPTPTPTV TPPSFSTNPT PLTQPEKRPA APRCRNKFRG  120
VRQRPWGRWT AEIRDPIQRK RVWLGTFYTA EEAAAVYDEA AVKLKGPDAV TNFPQVATVK  180
RELKVSPPEA TCSGEGFSSP TSVLAFCDGD STPFDAPFSM TDVNLGVVSQ RFAKEEFGEF  240
DPDEFLTWPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18118174663ATERF1
3gcc_A2e-18118174663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G080000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146901.10.0hypothetical protein PHAVU_006G080000g
TrEMBLV7BPB50.0V7BPB5_PHAVU; Uncharacterized protein
STRINGXP_007146901.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-23cytokinin response factor 4