PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G065700.1
Common NamePHAVU_006G065700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 315aa    MW: 35618.9 Da    PI: 9.7101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G065700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-083074345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +WT+ E +l+ +a + + ++   +W+++a++++ g+t  +++  + 
  Phvul.006G065700.1 30 KWTPAENKLFENALAVYDKDtpdRWHKVAEMIP-GKTVMDVVKQYK 74
                        8********************************.***998887775 PP
2Myb_DNA-binding44.63.3e-14136180347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Phvul.006G065700.1 136 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 180
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-42475IPR009057Homeodomain-like
PROSITE profilePS512938.7622681IPR017884SANT domain
SMARTSM007178.3E-102779IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-112981IPR009057Homeodomain-like
CDDcd001673.42E-83076No hitNo description
PfamPF002491.5E-63074IPR001005SANT/Myb domain
PROSITE profilePS5129420.486129185IPR017930Myb domain
SuperFamilySSF466898.61E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17132184IPR006447Myb domain, plants
SMARTSM007175.3E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-12133180IPR009057Homeodomain-like
PfamPF002491.2E-12136180IPR001005SANT/Myb domain
CDDcd001674.12E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKWEMEILPP ASPYMYNSNW LMDDNRNNTK WTPAENKLFE NALAVYDKDT PDRWHKVAEM  60
IPGKTVMDVV KQYKELEADV SDIEAGLIPI PGYSTTTSPF TLDWVNTPGY DGFKGITAKR  120
SSSGRPPEQE RKKGVPWTEE EHKLFLLGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY  180
FIRQLSGGKD KRRASIHDIT TVNLTETSRT SSEDSKRSTS PRHSVMLSHQ QPISSGASSG  240
MNFQWRNQSN AGVAMSLNPA HEQVFVSPYG LNSYGFKVQG QNLHRSSLHE SSYFGPQTPN  300
MVFQMQPSQH YSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-17311031183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G065700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146740.10.0hypothetical protein PHAVU_006G065700g
SwissprotQ8S9H71e-127DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV7BL840.0V7BL84_PHAVU; Uncharacterized protein
STRINGXP_007146740.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.17e-92Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]