PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G057800.1 | ||||||||
Common Name | PHAVU_006G057800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NF-YB | ||||||||
Protein Properties | Length: 232aa MW: 25290.5 Da PI: 5.5992 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 109.6 | 1.8e-34 | 52 | 142 | 6 | 96 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++im+k lP+nak+s+ ake++q+ ++++i+fvt++a +kc e rk +n+ddllwa+ ++Gf++y+ pl ++l++ r++eg Phvul.006G057800.1 52 SKMPITNVTKIMRKFLPNNAKVSDGAKEMIQQSATNYITFVTKKAKEKCLSEYRKIMNADDLLWAIQNVGFDEYIGPLGTFLQRCRNIEGG 142 579*************************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.6E-30 | 47 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-17 | 53 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.39E-23 | 53 | 147 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 6.7E-7 | 81 | 99 | No hit | No description |
PRINTS | PR00615 | 6.7E-7 | 100 | 118 | No hit | No description |
PRINTS | PR00615 | 6.7E-7 | 119 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEHGGSFFHI DQQVKSSSVP LQQENNYANT EIAAPANSNG GQNPNLIGRD KSKMPITNVT 60 KIMRKFLPNN AKVSDGAKEM IQQSATNYIT FVTKKAKEKC LSEYRKIMNA DDLLWAIQNV 120 GFDEYIGPLG TFLQRCRNIE GGTHGPTFGP GLNPMEMPHP PLPPPPPPPP PPPPPPAAAV 180 YSSGLDFSMH QNTNPEMFDT NDVGGYLEAV GCSSNAFINF DPFSLFQQDQ L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-27 | 54 | 138 | 13 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G057800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-112 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007146648.1 | 1e-172 | hypothetical protein PHAVU_006G057800g | ||||
TrEMBL | V7BL20 | 1e-170 | V7BL20_PHAVU; Uncharacterized protein | ||||
STRING | XP_007146648.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 5e-34 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G057800.1 |
Entrez Gene | 18627906 |