PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G008300.1
Common NamePHAVU_006G008300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 886aa    MW: 99999.4 Da    PI: 6.5739
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G008300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1401.3e-1261140290
                FAR1   2 fYneYAkevGFsvrkskskks......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                         fYneYA+++GFs ++    ++      k +g    r+fvC +eg ++  +++              C a+++++++ ++kw+vtkl++eH+
  Phvul.006G008300.1  61 FYNEYARHMGFSSKVGPYGHTkvdghsKVDG-ENYREFVCGREGLKKGLNES--------------CMAMIRIELKGQNKWVVTKLVNEHS 136
                         **************99888883444423333.45789********9987766..............************************* PP

                FAR1  87 Hela 90 
                         H+l 
  Phvul.006G008300.1 137 HSLL 140
                         *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-961140IPR004330FAR1 DNA binding domain
PfamPF105511.5E-28280372IPR018289MULE transposase domain
PROSITE profilePS5096611.239558594IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-10564592IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-8569596IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MDVQVINAEG SGHQTKADNG DAEPSDSEVN NAENYGIHVE DGISEPYMGM EFETVDVAKT  60
FYNEYARHMG FSSKVGPYGH TKVDGHSKVD GENYREFVCG REGLKKGLNE SCMAMIRIEL  120
KGQNKWVVTK LVNEHSHSLL SSSKAYNNQP SKHFSSVGRT MPETYQGVGL VPSGVMYVSM  180
DGNRVSNQNT RGMKNIHTTP AERSHPVKNS SLLNYTIRPS LQNRTLGRDA HNLLEYFKKM  240
QAENPGFFYA IQLDEDNRMS NVFWADARSR TAYSCYGDTV HLDTTYKVNQ YRVPFAPFTG  300
VNHHGQMVLF GCALLLDDSE ASFLWLLKTF LTAMNDCQPV SITTDQDRAL QTAVSQVLPQ  360
ARHCISKWHI LREGQERLAH VCLAHPNFQA ELYNCINLTE TIDEFESFWN CILDKYELRR  420
NDWLQSLYNA RAQWVPAFFR DSFFAALSPN QGFDDSFFDG YVNQQTTLSL FFRQYERALE  480
SWIEKEIEAD FETLCTTPVL KTPSPMEKQV ANLYTRKIFS KFQDELVETF VYTANRIEGD  540
GPNSTFRVAK FEDDQKAYSV SLNHSELKAN CSCQMFEYSG ILCRHILTVF TVTNVLTLPP  600
HYILKRWTRN AKNSSGLDEH TGESHAQESL TARYSNLCKE AIRYAEEGAV TVETYNAAIS  660
GIREGGKKVA NVKRSVPKVS PNNQASGTAY DDRKTSTPTS DTTPLLWPRQ DEIMRRFNLN  720
DAGGPVQSVA DLNLPRMAPV SLYRDDGPSE NMVVLPCLKS MTWVMESKNS TPGNKVAVIN  780
LKLQDYSRVP STESEVKFHL SRVTLEPMLK SMAYISEQLS TPANKVAVIN LKLQDTETTS  840
GESEVKFQVS RDTLGAMLRS MAYIREQLSH ADDAQSEPLS KKHKK*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G008300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146047.10.0hypothetical protein PHAVU_006G008300g
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLV7BNA10.0V7BNA1_PHAVU; Uncharacterized protein
STRINGXP_007146047.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]