PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G183900.1
Common NamePHAVU_005G183900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 661aa    MW: 76196.9 Da    PI: 6.7744
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G183900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.3e-2237119290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYn YAke GF vr++++ ++ +++e +++++ Cs  g++++++ +     r+r+etrtgC a++k +++++ +w+++++el+HnH ++
  Phvul.005G183900.1  37 FYNWYAKEQGFGVRVTNTWYR-KTKERYRAKLSCSSAGFKKRTEAN-----RPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLIN 119
                         9****************9997.67779*************998877.....***********************************775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1937119IPR004330FAR1 DNA binding domain
PfamPF105511.3E-23243337IPR018289MULE transposase domain
PROSITE profilePS509668.716530566IPR007527Zinc finger, SWIM-type
SMARTSM005750.003541568IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MDIVCLNSEG VGDEEGDAPV APVVGMEFES YEDVYYFYNW YAKEQGFGVR VTNTWYRKTK  60
ERYRAKLSCS SAGFKKRTEA NRPRPETRTG CPAMIKFRLM DSTRWRIIEV ELDHNHLINP  120
TSAKFYKSHK QVALGTKRTF HLDAAAATQQ VHKIRMFRTV IVDAEDDSSV HPDEGESPKG  180
LYSNTQLKLK KGDAEAILNF FSHQQLADPD FFYVVDVNER GCFRNLFWAD AKSRVAYSYF  240
SDVVAIDTAC LNGAYQVPLV MFLGINHHKQ SILFGCGLLA SDTVESYTWL FRAWLTCILG  300
RPPQVIITHQ CGILQTVVAD VFPRSTHCLC LFNIMQKVPE KLGACVQYEA ISAVLSRAVY  360
SSLRAEEFEA TWEDMMKSNE IRGNKWLQSL YEERKRWAPV YLKEIFLAGI FSIPQSDVVS  420
FFFEGCLDEQ TSLKEFLEKY DQTLQTKRQL EALADLDSKS CSFVPKSRSY FELQVSKLYT  480
NEILRMFERE VEGMFSCFNS RQINVDGAVI TYIVEEQVEV EGNQRGARDY EVCYNEPEME  540
VFCICGLFNF RGWLCRHALF ILSQNGIKEI PAQYIVSRWR KDMKRGSVYD HNCSGIDISN  600
PVHRYDHLYK QIVKVVEEGK KSDDHYRTAL QAMENILRKL HILNVEDPHK LMYKNSCPNN  660
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G183900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150826.10.0hypothetical protein PHAVU_005G183900g
TrEMBLV7C0J40.0V7C0J4_PHAVU; Uncharacterized protein
STRINGXP_007150826.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6