PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G175200.1 | ||||||||
Common Name | PHAVU_005G175200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C3H | ||||||||
Protein Properties | Length: 204aa MW: 22883.6 Da PI: 9.8413 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 40 | 63 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelCr+f+r G C +G +C +aH+ Phvul.005G175200.1 40 KTELCRRFRR-GVCGHGIKCDYAHS 63 8*********.*************8 PP | |||||||
2 | zf-CCCH | 24.4 | 5.2e-08 | 72 | 94 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f+++ +C+yG +C++ H+ Phvul.005G175200.1 72 KLCRLFLQNKHCPYGRTCRYLHS 94 79********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-12 | 35 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.98E-7 | 37 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-6 | 40 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 68 | 96 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-4 | 68 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-8 | 70 | 95 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-7 | 70 | 95 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-6 | 72 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEAQAAAQTH HLRNSTESEK HNSNNNHHSN HNNNRNLMVK TELCRRFRRG VCGHGIKCDY 60 AHSVGELRRQ PKLCRLFLQN KHCPYGRTCR YLHSAATALP PPPSTFPIPN PQSQPEVGQL 120 DRSSSAEYKR MQTYAAVPSD SYPYAENSTM HTAIAATANA STSTLAAGSS HNNEPYAVKF 180 VFKKNELKKI NRIYADWISD FSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G175200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 2e-83 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150718.1 | 1e-152 | hypothetical protein PHAVU_005G175200g | ||||
TrEMBL | V7BXJ1 | 1e-151 | V7BXJ1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150718.1 | 1e-152 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15954 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G175200.1 |
Entrez Gene | 18631405 |