PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G170600.1 | ||||||||
Common Name | PHAVU_005G170600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23501.6 Da PI: 5.8958 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Phvul.005G170600.1 44 LYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 93 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.34E-31 | 43 | 101 | No hit | No description |
Pfam | PF00847 | 2.9E-12 | 43 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-31 | 44 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-34 | 44 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.458 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 44 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-9 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTDTPCHQTP PTSPCNSSSS KPHKTETPKQ SKPKRNRDPT RHPLYHGVRM RNWGKWVSEI 60 REPRKKSRIW LGTFATPEMA ARAHDVAALS IKGRAAILNF PTIVNLLPRP VTCAPRDIQV 120 AAAEAAAMVE FDRECSDEAE SSDLSEIVEL PNIEESLESV ESRSEFAFID SVDSWLYPPM 180 AVGSICEMMV GEDECGFFHF QTDHQKTCSV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 42 | 106 | 12 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G170600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150657.1 | 1e-156 | hypothetical protein PHAVU_005G170600g | ||||
Swissprot | Q9LYD3 | 6e-57 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | V7C196 | 1e-155 | V7C196_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150657.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-52 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G170600.1 |
Entrez Gene | 18631356 |
Publications ? help Back to Top | |||
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