PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G153200.2 | ||||||||
Common Name | PHAVU_005G153200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29226.9 Da PI: 8.0778 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.5 | 4.8e-28 | 95 | 182 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+ +eH H+l+p Phvul.005G153200.2 95 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHAHPLTP 182 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-25 | 95 | 182 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MLCFTVEFGI DGSINGETVG NVTVGQINCC STADENKVGC SSFNPAYKHD HDDNITQDSS 60 GGDTIPSGIP AVSVVSADEP YVGQEFDSEA AAHAFYNAYA TRVGFIIRVS KLSRSRRDGS 120 AIGRALVCNR EGYRMPDKRE KIVRQRAETR VGCRAMILVR KVSSGKWVVT KFIQEHAHPL 180 TPGKGRRDCI YEQYPNEHDK IRELSQQLAI EKKRSATYKR HLELIFEHIE EHNESLSKKI 240 QHIVERVKEM ETKEQQSQR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G153200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150434.1 | 0.0 | hypothetical protein PHAVU_005G153200g | ||||
TrEMBL | V7BZA2 | 0.0 | V7BZA2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150433.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-87 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G153200.2 |
Entrez Gene | 18631175 |