PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G153200.1

Common Name

PHAVU_005G153200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 289aa MW: 32404.5 Da PI: 8.7735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G153200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.2	6e-28	124	211	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+ +eH H+l+p Phvul.005G153200.1 124 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHAHPLTP 211 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-25	124	211	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MNLLSLHGTQ KHKSKFSQSR SLPTTIEFAS ASILMEFGID GSINGETVGN VTVGQINCCS 60 TADENKVGCS SFNPAYKHDH DDNITQDSSG GDTIPSGIPA VSVVSADEPY VGQEFDSEAA 120 AHAFYNAYAT RVGFIIRVSK LSRSRRDGSA IGRALVCNRE GYRMPDKREK IVRQRAETRV 180 GCRAMILVRK VSSGKWVVTK FIQEHAHPLT PGKGRRDCIY EQYPNEHDKI RELSQQLAIE 240 KKRSATYKRH LELIFEHIEE HNESLSKKIQ HIVERVKEME TKEQQSQR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G153200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150433.1	0.0	hypothetical protein PHAVU_005G153200g
TrEMBL	V7BWP3	0.0	V7BWP3_PHAVU; Uncharacterized protein
STRING	XP_007150433.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-87	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G153200.1
Entrez Gene	18631175