PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G142900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WOX | ||||||||
Protein Properties | Length: 224aa MW: 25111.5 Da PI: 9.1566 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R++++keq+ +Le+++++ r+p++e+++e++++l +++ ++V++WFqN++a++++ Phvul.005G142900.1 18 SRWSPKKEQIAILESFYKQgIRTPNTEQIKEITSRLsaygHIQGKNVFYWFQNHKARQRQ 77 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 111.8 | 3.6e-36 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+P++eQi iLe+ yk+G+rtPn+e+i++it++L++yG+i++kNVfyWFQN+kaR+rqkq Phvul.005G142900.1 17 VSRWSPKKEQIAILESFYKQGIRTPNTEQIKEITSRLSAYGHIQGKNVFYWFQNHKARQRQKQ 79 58***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.382 | 13 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-4 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-12 | 17 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.8E-17 | 18 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-8 | 18 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.14E-5 | 19 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MESRTSAGRE PSGSLSVSRW SPKKEQIAIL ESFYKQGIRT PNTEQIKEIT SRLSAYGHIQ 60 GKNVFYWFQN HKARQRQKQK QQCIAYSNSF LHASQPIGQT VVCAPFYPQQ CGMNFYPQPG 120 KIVPAGGVIE TVVPFGMLKM CDVQQKQLQQ RVQTGYNYSI SDSKTLTLFP LHPTGILEEK 180 TTNQVSSHAS LVSVDVTDTC HGSLSVVEDS RPEKQQFLDF LTF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G142900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423722.1 | 1e-103 | PREDICTED: WUSCHEL-related homeobox 2-like | ||||
TrEMBL | A0A0L9UN03 | 1e-101 | A0A0L9UN03_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SGD4 | 1e-101 | A0A0S3SGD4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G41000.1 | 6e-68 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 6e-35 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G142900.1 |