PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G137700.1 | ||||||||
Common Name | PHAVU_005G137700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Dof | ||||||||
Protein Properties | Length: 288aa MW: 31552 Da PI: 7.9832 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 2.9e-39 | 24 | 84 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdst tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ s Phvul.005G137700.1 24 PEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSPS 84 6899*****************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 22 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.6E-33 | 26 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.947 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDPSSGQPQE ISSQSGEKKP RPNPEQALKC PRCDSTSTKF CYYNNYSLSQ PRYFCKSCRR 60 YWTKGGTLRN VPVGGGCRKK RSPSSSLKRD HDQTFTPNLN PLTTFPQLSY GSNDFALALA 120 RLQKQSSGQL GYNDHEISAL RNPTGSFCDI LSNSGMNPSS ANPSFLDAIR TGFLETQNHL 180 QNLYYMYGNG DMGEVDNGNS GGVGVSGEMM LPYNQVMSNA ATQSMSELMR QEQCGGSEQS 240 ERKFLGGSPW QLNADSTNIG EIDSGRAIAS WNSFTSSWHG LLHSPLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G137700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150234.1 | 0.0 | hypothetical protein PHAVU_005G137700g | ||||
TrEMBL | V7BYT9 | 0.0 | V7BYT9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150234.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 4e-37 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G137700.1 |
Entrez Gene | 18631018 |