PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G132500.1

Common Name

PHAVU_005G132500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

TCP

Protein Properties

Length: 170aa MW: 18640.2 Da PI: 9.2451

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G132500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.4	7.6e-32	40	108	5	73
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 + ++ ++h kv+gRdRRvRlsa caar+F+L++eLG ++d++tieWLl +a+pai+++tgt+ ++ + Phvul.005G132500.1 40 RGSKGDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAIIAATGTGIVPSITT 108 66789********************************************************66666322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.7E-27	42	110	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.764	43	97	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MINIMNSMGS VNNISVEREY ESFSAKEGPS MVKNKRPPSR GSKGDRHIKV NGRDRRVRLS 60 AICAARIFQL TRELGKKTDG ETIEWLLHKA EPAIIAATGT GIVPSITTSV DTAATFMATT 120 TTFLPLHTIA AQDANLVTVA AVARTEQPIP PFHFDFEWMQ HSDLGFRDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G132500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-160	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150170.1	1e-124	hypothetical protein PHAVU_005G132500g
TrEMBL	V7BW51	1e-123	V7BW51_PHAVU; Uncharacterized protein
STRING	XP_007150170.1	1e-123	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G132500.1
Entrez Gene	18630965