PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G130100.1
Common NamePHAVU_005G130100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 415aa    MW: 46251.2 Da    PI: 7.5712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G130100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.5e-07237259123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F+r  nL+ H+r H
  Phvul.005G130100.1 237 HYCQVCGKGFKRDANLRMHMRAH 259
                         68*******************99 PP
2zf-C2H210.70.0017332355123
                         EEETTTT.EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                         y+C+ C+ k Fs  s+L++H + +
  Phvul.005G130100.1 332 YVCKRCNqKQFSVLSDLRTHEKHC 355
                         9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.61E-6235262No hitNo description
Gene3DG3DSA:3.30.160.604.2E-7237298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653237264IPR007087Zinc finger, C2H2
SMARTSM003550.0034237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
SMARTSM00355150294327IPR015880Zinc finger, C2H2-like
SMARTSM0035523332354IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MISRATSSFQ NHQGLRMFSD PEDLVSPSVE SASASHSSTL LFNLSILKDK VGEVQTLVGV  60
ILSPNESLPE STSMAISSMN STIQEIIVTA TSMMLTCQQM ALTTTPSGTN DTNTCTNKLH  120
QLNKLLPHSN FGTNRSVLGN IGIDISDHHQ GLFSSTESEA LDWFSESYNN NEDNSNIISK  180
TKEDDPSVVV SENNMIISRG GEEHEPNEEW YNHRGLSPKN SDIIELDAAD LLAKYTHYCQ  240
VCGKGFKRDA NLRMHMRAHG DEYKTNAALS NPIKNMGKLE GESEILMSLK PKRYSCPQEG  300
CRWNRKHAKF QPLKSMICAK NHYKRSHCPK MYVCKRCNQK QFSVLSDLRT HEKHCGDLKW  360
QCSCGTSFSR KDKLMGHVAL FVGHQPAITN IALSSYSAKL EQHTLQMQID GSSR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G130100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150139.10.0hypothetical protein PHAVU_005G130100g
SwissprotQ0WT245e-93STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLV7BYJ40.0V7BYJ4_PHAVU; Uncharacterized protein
STRINGXP_007150139.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-94C2H2 family protein