PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.005G105200.1 | ||||||||
Common Name | PHAVU_005G105200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 408aa MW: 45836.4 Da PI: 6.3659 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 4e-19 | 211 | 261 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Phvul.005G105200.1 211 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 261 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.22E-33 | 210 | 270 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 211 | 269 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-23 | 211 | 269 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 211 | 268 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-40 | 211 | 274 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 212 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 212 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 234 | 250 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 408 aa Download sequence Send to blast |
MAAANTGKFD MGDETNNCSQ KGSEGKDWEV EKGKGMGSTT QRRQWKPVFD DTSISHNRPL 60 KKIRSPDRHN TNQSSSSSSS SAPFQPSPLS TPPSSSSRIV FPFAFNGSQH PMQFPHQFGA 120 TNSPFPHPSF QNQQQQMISF DSQQQNLPFP PIMARDSSLP HYHHHQQHPQ QLLQYWSDAL 180 HLSPRGMLTH LGPDGRPLFR PPTQPLNATK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT 240 FDTAEDAAMA YDREAFKLRG ENARLNFPEL FLNKDKNKQV EEEPSSPAQN QPELEPVPVG 300 RDMPREESNE NDSGIGSSDA TDEVHAAAAE GGEGVSQELV WGEMSAWFNA IPAAWGPGSP 360 VWDDLDSTNN LLYQSHVPFS NSNQQEINDA QRHEHNMGPG YLWKDQD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 210 | 268 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.005G105200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149866.1 | 0.0 | hypothetical protein PHAVU_005G105200g | ||||
TrEMBL | V7BXT7 | 0.0 | V7BXT7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149866.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20880.1 | 7e-60 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.005G105200.1 |
Entrez Gene | 18630687 |