PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G080300.1
Common NamePHAVU_005G080300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 305aa    MW: 34715.1 Da    PI: 6.2862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G080300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.3e-22138199159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy WrKYGqK+  ++++ rsYYrCt++   gC++ k+v+r ++dp +  + Y g+H+++
  Phvul.005G080300.1 138 VEDGYVWRKYGQKMTMNAKYLRSYYRCTHKndqGCQAMKQVQRIEDDPPLYRTNYYGHHTCK 199
                         58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.485133201IPR003657WRKY domain
SuperFamilySSF1182905.62E-22136199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-23137200IPR003657WRKY domain
SMARTSM007749.2E-33138200IPR003657WRKY domain
PfamPF031063.1E-22139199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MENQIPNGKR AMEEELNRGR DMANQLLEVL AHDISITHLE KEEGSKSVLP FVEDLVRKVL  60
CSFTNTLLLL NSSNDVSHEV ATSITLRDVS SSTSSPEKLE SVDETCKSRN ILSTEKLRRG  120
YKRKSIAPTW GKDSCILVED GYVWRKYGQK MTMNAKYLRS YYRCTHKNDQ GCQAMKQVQR  180
IEDDPPLYRT NYYGHHTCKS HMNPEIVLEP LSLSASSTLL SFNNSLHSKQ QNPFPSSLLA  240
SNKHELMEVI HDEHSAQNQL SSLQDFLLYD CEVYCDYSRR VAMLSSTEPL EFENAFISTL  300
DFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20138199869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRGYKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G080300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2543240.0AC254324.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb015-K06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149558.10.0hypothetical protein PHAVU_005G080300g
TrEMBLV7BU730.0V7BU73_PHAVU; Uncharacterized protein
STRINGXP_007149558.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-28WRKY DNA-binding protein 70