PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G080200.1
Common NamePHAVU_005G080200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 302aa    MW: 34667 Da    PI: 6.4194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G080200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.91e-23132193159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy WrKYGqK+  ++++ rsYYrCt++   gCp++k+v+r +edp +  +tY g+Hn++
  Phvul.005G080200.1 132 MEDGYIWRKYGQKMTMNTKYLRSYYRCTHKydqGCPATKQVQRIQEDPPLYRTTYYGHHNCK 193
                         58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-25120193IPR003657WRKY domain
PROSITE profilePS5081121.85127195IPR003657WRKY domain
SuperFamilySSF1182904.18E-24128194IPR003657WRKY domain
SMARTSM007745.1E-36132194IPR003657WRKY domain
PfamPF031061.1E-23133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MENQPSNGRK AMEEELNKGR YTANQLLQIL VHKSNTRHRD AEVEGLVLPF VEDLVRKVLR  60
SFSNTLLLLN THSDIFDEVV MPTTINDVSS SLKCPNLEDK DGVCKGSINA KRRRVCRKRN  120
APTWEKNSSH LMEDGYIWRK YGQKMTMNTK YLRSYYRCTH KYDQGCPATK QVQRIQEDPP  180
LYRTTYYGHH NCKISLGPEI ILEPASSSDS SMFLSFSTTF PTKEEYQFSS SLFSSTKQEP  240
MEGIPDDCGM HNQLPSSDYH LLDDYELDFN CLRYDTMQSM LSSTESVQFD KVYGSGMDFD  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20132193869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G080200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2543240.0AC254324.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb015-K06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149557.10.0hypothetical protein PHAVU_005G080200g
TrEMBLV7BYA00.0V7BYA0_PHAVU; Uncharacterized protein
STRINGXP_007149557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-30WRKY DNA-binding protein 70