PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G031300.1 | ||||||||
Common Name | PHAVU_005G031300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | B3 | ||||||||
Protein Properties | Length: 215aa MW: 24775.7 Da PI: 6.6753 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.7e-13 | 98 | 191 | 2 | 85 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E...EE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf...vv 81 k+lt+sdv+ + +rl l k+++e+ +++ e+++++ ++d + ++++++++ + ++ yvl +GWk+F + ++L+ D+ ++ Phvul.005G031300.1 98 HKKLTTSDVNVNqNRLLLNKNHVEKSflpllknDENIERGIQVPVYDAHQNTFSLTFKKWTNK-YYVLNGGWKDFFQVHKLQKDDSitvCI 187 589999*9987769*********999*****996667799*****************666664.6********************722244 PP EEE- CS B3 82 Fkld 85 F+++ Phvul.005G031300.1 188 FRHS 191 5543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.305 | 98 | 204 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.18E-14 | 98 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-17 | 98 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.3E-9 | 99 | 194 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.13E-12 | 99 | 198 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MQGEKDPQKW HENIFGNKRC KHSQNIAEEL GEASRFKDGG DVSLENLDQE AEFLSESSSP 60 EVCFSSQEHL IRDSYSPSSL PAMENFREYI LEHGEPLHKK LTTSDVNVNQ NRLLLNKNHV 120 EKSFLPLLKN DENIERGIQV PVYDAHQNTF SLTFKKWTNK YYVLNGGWKD FFQVHKLQKD 180 DSITVCIFRH SSHNKLCFAL DYKKIGGDKI QNLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G031300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148990.1 | 1e-159 | hypothetical protein PHAVU_005G031300g | ||||
TrEMBL | V7BSP3 | 1e-158 | V7BSP3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148990.1 | 1e-159 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 1e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G031300.1 |
Entrez Gene | 18629922 |