PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G022000.1
Common NamePHAVU_005G022000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 634aa    MW: 68318.6 Da    PI: 6.701
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G022000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07213233526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C++Gd C +aHg
  Phvul.005G022000.1 213 PCPEFRK-GACRRGDMCEYAHG 233
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.35E-11173No hitNo description
PROSITE profilePS5029715.512195IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.54E-13175IPR020683Ankyrin repeat-containing domain
PfamPF127965.4E-7170IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-13175IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.1023065IPR002110Ankyrin repeat
SMARTSM002482.4E-43062IPR002110Ankyrin repeat
SMARTSM003569.5E-6208234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981213235IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4213233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4241271IPR000571Zinc finger, CCCH-type
SMARTSM0035647243266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MVASMYGSLD VLKLILSWPG ADVNFSCGTD RSTALHCAAS GGSVNAVDVV KLLLSSGADI  60
RCVDANGNRP VDIIVVPPKL EGLKATLEDL LSDSACDGSV GDCFIPVSVN SSCSDSATHF  120
LSLENGLPSS PMASKYTDTA VNSASEKKEY PIDPSLPDIK NSIYATDEFR MFSFKVRPCS  180
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH  240
PAQYRTRLCK DGVSCNRRVC FFAHTAEELR PLYVSTGSAV PSPRSTASTP NVMDMAAAMS  300
LFPGSPSSLS AMSPSPFAQP MSPSSSGISH SSIAWPQPNV PALHLPGSNI QTSRLRSSLN  360
ARDMPPVDLD VLQDFNGQQH LLNDLSCFSQ PRPGAISVSR SGRSKTLTPS NLDLFSPEIS  420
SSPRYSDPAA ACVFSPTHKS AVFNQFQQLQ SSLSPINTSV SSPRNIEHPL LQASFGVSSP  480
GRMSPRSLEP ISPMSARLSA FSQRDKQQQL RSLSSRDLGA HNPVSIVGSP VNSWSNWGSP  540
HGNAKVDWSV NGNELGRLQR SSSFELGNNG EEPDLSWVQS LVKESPSELK EKLAGSGPVV  600
SADGQNSNPQ VESIDHSVLG AWLEQMQLDQ LVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G022000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148879.10.0hypothetical protein PHAVU_005G022000g
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLV7BV170.0V7BV17_PHAVU; Uncharacterized protein
STRINGXP_007148879.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]