PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G019900.1
Common NamePHAVU_005G019900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 364aa    MW: 40638.1 Da    PI: 7.2698
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G019900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k++lC+ffa  G C  G+ C F+H+
  Phvul.005G019900.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                        99****6666.*************5 PP
2zf-CCCH26.21.4e-083453525
                        --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                        +C f+++ G C yG+rC++ H
  Phvul.005G019900.1 34 ICTFYQK-GVCAYGSRCRYDH 53
                        7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.382956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00243055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-53253IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-63453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.882141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.42E-10199274No hitNo description
Gene3DG3DSA:3.30.40.101.0E-9206271IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.72E-4209269No hitNo description
PfamPF000972.7E-7210267IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.2E-7210267IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.386210268IPR001841Zinc finger, RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.225297326IPR000571Zinc finger, CCCH-type
SMARTSM003560.07297325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GVCAYGSRCR YDHIKASQAQ  60
TSIPSSSVIE QHTLVPDTGA FGNIITTSTG VGTAAEFSLS TGPYILPTEP AWNNELAWNP  120
EFEYYEILGD DNVGRSIITS PSELSICSFA AAGNCPRGGK CPHLHGDLCA TCGKHCLHPF  180
RPEEREEHVK SCENKHKYLE ALKRSQEIEC SVCLERVLSK PTAAERKFGL LSECDHPFCI  240
SCIRNWRSSN PTLGMDVNST LRACPICRKL SYFVIPSVIW YSTTEEKQEI IDNYKAKLKS  300
IDCKHFDFGD GNCPFGTSCF YKHAYRDGRV EQVVLRHLGA ADGNTVIAKD IRLSDFLSNM  360
HLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G019900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148855.10.0hypothetical protein PHAVU_005G019900g
RefseqXP_007148856.10.0hypothetical protein PHAVU_005G019900g
SwissprotE0X9N41e-175C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLV7BUW90.0V7BUW9_PHAVU; Uncharacterized protein
STRINGXP_007148855.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-163C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]