PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G005800.2
Common NamePHAVU_005G005800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 741aa    MW: 80203.7 Da    PI: 6.2948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G005800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.3e-32313370260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+H h+k
  Phvul.005G005800.2 313 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHSHPK 370
                         8****************************************.***************85 PP
2WRKY102.82e-32529587159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Phvul.005G005800.2 529 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 587
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-25310371IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-28310371IPR003657WRKY domain
SMARTSM007744.9E-35312370IPR003657WRKY domain
PfamPF031061.4E-24313369IPR003657WRKY domain
PROSITE profilePS5081122.928313371IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-37514589IPR003657WRKY domain
SuperFamilySSF1182901.96E-28521589IPR003657WRKY domain
PROSITE profilePS5081138.32524589IPR003657WRKY domain
SMARTSM007741.9E-37529588IPR003657WRKY domain
PfamPF031067.6E-25530587IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MAGIDDNVAL TGDWGLASPS PRTFFSRMLE EDHVTRSVSE HSGSGRTGEF FSGPHEPSET  60
GKKNMQDGAE DGDSGPQKLN SRGGLVERMA ARAGFNAPRL NTESMRTTDL SLNSDIHSPY  120
LTIPPGLSPT TLLDSPVFLA NSLAQPSPTT GKFLFMSNGN MRHSELSSDA PEKCKDNGFD  180
DIYASSFAFK PATDSGSSFY HGAGRKINPT TVPQQSRHGI EVSAQSENSF HSQSVDAVKV  240
QTENRSGLHL QADFVESPPE KDIKMFAADQ RAFDAVGGGI EHSTPVEEHG DEEGDQRGNG  300
DSVTGGVGGT PSDDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCQVKKKVE RSHEGHITEI  360
IYKGTHSHPK PPPNRRSGIG SVNPHTEMQV DNPEHVESHN GGEGDMDWGN VQKGNVAGAG  420
NWKHENLEAT SSASIGPEYC NQSTNLQSQN AGTLIDSGEA VDASSTFSNE EEEDDRGTHG  480
SVSLGYDGEG DESESKRRKL ESYADLSGAT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ  540
KVVKGNPNPR SYYKCTNAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARASSHVNAN  600
TSSAGQASGV LHTHVHRPES SQVHNGMGRL ERPSLGSFNL PGRQQLGHSH GFSFGMNQSM  660
LSDLAMSGLG HMQAKLPVMP VHPFLAQQQQ QQQQQNPSND FGFMMPKGEP NVEGGGGLNL  720
PNGSSVYQEI MSRMPLGPHM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36313590878Probable WRKY transcription factor 4
2lex_A2e-36313590878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G005800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148682.10.0hypothetical protein PHAVU_005G005800g
RefseqXP_007148683.10.0hypothetical protein PHAVU_005G005800g
RefseqXP_007148684.10.0hypothetical protein PHAVU_005G005800g
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLV7BVU40.0V7BVU4_PHAVU; Uncharacterized protein
STRINGXP_007148682.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-177WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]