PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G177600.1 | ||||||||
Common Name | PHAVU_004G177600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 1107aa MW: 122271 Da PI: 6.7714 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.3e-22 | 131 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Phvul.004G177600.1 131 FCKQLTASDTSTHGGFSVPRRAAEKIfphldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 218 99*****************************9545444.38************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++l+++++r+ Phvul.004G177600.1 219 RDEKQQLLLGIRRA 232 5688889****997 PP | |||||||
2 | Auxin_resp | 120.2 | 1.6e-39 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+ Phvul.004G177600.1 257 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 340 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-42 | 121 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-40 | 123 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.46E-18 | 130 | 222 | No hit | No description |
Pfam | PF02362 | 2.3E-20 | 131 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 131 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-22 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-34 | 257 | 340 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 27.193 | 994 | 1078 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.4E-7 | 994 | 1079 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.53E-6 | 1007 | 1072 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1107 aa Download sequence Send to blast |
MKTHPPQPEG GSAAPNPTQE KRSINPELWQ ACAGPLVNLP PSATHVIYFP QGHSEQVAAS 60 LKKDVDSQIP NYPNLPSKLL CLLHNLTLHA DPETDEVYAQ MTLQPVPSFD KDALLRSDLA 120 LKSTKPQPDF FCKQLTASDT STHGGFSVPR RAAEKIFPHL DYSMQPPAQE LVARDLHDNV 180 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPTNIS 240 SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPLAKYYKS VYSHQPSLGM 300 RFRMMFETED SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE KRSRVSIWEI 360 EPVTAPFFLC PPPFFRSKRP RQPGMPDDEL SDFDNIFKRT MPWLGDDMCM KDPQGLPGLS 420 LAQWMNMQQN PALASSLQPN FAPSLSGSIL QNIPGADISR QLGFSAPQIS PSNNVAFNTQ 480 RLLQTAQQLD HLQKLPSTSS TLGTVLPPQQ QLGDITQQSR QNLANQTMPQ GQVQAQLLHP 540 QNIVQTNNIQ QQQPSIQNHQ MHRSLSQNPS QQQTIIGQSP IPDHLQQLQM SDNQIQLHLL 600 QKFQQQQQKQ THLAQQTVLQ QPTQLTQIQD QQRQILDKTH NLSRAVTPGQ VLEIPPLLKN 660 SLPEANSISN QITKANFQNN IQFPQQPKLQ QQQPGLLSEM SGHMALLPTH TTNQLSAAGS 720 SILNGAAGAG QSVITDDIPS CSTSPSTNNC ASALAPLINS RLQRNTIVGD DMAQSASTIL 780 SSSALETMSS NANLLKDLQP KCDVKPSLNI SKNQNQGHFG LQSYLNGSAA HTDCLDTSSS 840 TTSVCLSQSD AHMHQNNNPL AYNPHSMLFR DNSQDGEVQA DARGNIPYAN NMDSQMGMQL 900 NPDSLLTKGT LGLGKDLSNN FSSEGLLGNY ENNRDAQQEL SSSMVSQTFG VPDMAFNSID 960 STIDDSSFLN RGTWAPPPAP PPPPLPPTQF QRMRTYTKVY KRGAVGRSID ITRYSGYEEL 1020 KQDLARRFGI EGQLEDRQRI GWKLVYVDHE SDVLLVGDDP WEEFVNCVRC IKILSPQEVQ 1080 QMSLDGDFGN GGLPNQACSS SDGGNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 20 | 361 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G177600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152995.1 | 0.0 | hypothetical protein PHAVU_004G177600g | ||||
TrEMBL | V7C4C0 | 0.0 | V7C4C0_PHAVU; Auxin response factor | ||||
STRING | XP_007152995.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6823 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G177600.1 |
Entrez Gene | 18633400 |