PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G173600.1
Common NamePHAVU_004G173600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 355aa    MW: 39539.3 Da    PI: 7.2877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G173600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08128149426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+ f++ G Ck Gd+C FaHg
  Phvul.004G173600.1 128 AACPEFRK-GSCKKGDTCEFAHG 149
                         78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0876113IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915125151IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6128149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5129151IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643159183IPR000571Zinc finger, CCCH-type
SMARTSM0035614159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMLGEHRRSN PTVHVPPWPA HDDPTAEMYS AFLTNDVNAA EYSPYYLQEA LTALQRYLPA  60
NETDADSDSE AQPDAPVDAY SCDHFRMYEF KIRRCARGRS HDWTECPYAH PGEKARRRDP  120
RKFHYSGAAC PEFRKGSCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH  180
TPEQLRLVPM QSPRSSGESY DGSPMRQILQ STAFMSSPAA SLSPPESPPL SPSMNEMVAS  240
LRNLQLGKMK SMPHNRNVSV GSPGYGSPRG SVLRPGFCSL PTTPTQQPAR SGVNYLDIWE  300
QSVEEEPVME RVESGRGIRA KMFEKLSKEN SLEGSGSGHG SGAPDVEWVS ELVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G173600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152945.10.0hypothetical protein PHAVU_004G173600g
SwissprotO821991e-136C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLV7C4670.0V7C467_PHAVU; Uncharacterized protein
STRINGXP_007152945.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-138C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]