PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G171600.1
Common NamePHAVU_004G171600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HRT-like
Protein Properties Length: 434aa    MW: 48163.6 Da    PI: 10.3545
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G171600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like52.58.3e-17259288130
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                         iCGv l+dG  C+r+P+++R RC eHKGmR
  Phvul.004G171600.1 259 ICGVSLGDGLLCRRPPAEKRLRCSEHKGMR 288
                         8****************************9 PP
2HRT-like61.51.3e-19324354131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+il+dGs+C+rqPv+gRKRC+eHKG+Ri
  Phvul.004G171600.1 324 ICGIILNDGSTCRRQPVEGRKRCHEHKGRRI 354
                         8*****************************7 PP
3HRT-like60.82.1e-19394424131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+il+dGs C+rqPvkgRKRC+eHKG+R+
  Phvul.004G171600.1 394 ICGIILNDGSACTRQPVKGRKRCHEHKGRRT 424
                         8****************************95 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAAVAVTRLK REQCNRTKHD SSFSHWKILI GPSDWEDHSR GKEGCARYRI HNLPQESNPG  60
VYELGIAVAG GGLGRQISKL APHPDRIVVV YLGQADNVRT RLQCYGRTGA HLESAISDDS  120
SLQKGLPLFQ KVFSQGFSIV YRWAPTQNKE DALRTEDQLL RTFDYAWNTS NNGIRRPEEI  180
LQKLKKIASG TRTLSDVAKV LLPFTQKQVG IRIKSCKLPQ DDDNGSYNFI TRVFSFNRSR  240
PRIVQSTSGV VQEQENAKIC GVSLGDGLLC RRPPAEKRLR CSEHKGMRAN VSIAKAISVA  300
KSESNVPQTV VGSPVDESMT NTNICGIILN DGSTCRRQPV EGRKRCHEHK GRRIGASVQK  360
RGNGYRYQNV SHGVEDSLQT LVGSPVDESI SNTICGIILN DGSACTRQPV KGRKRCHEHK  420
GRRTRASFHV NQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G171600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152922.10.0hypothetical protein PHAVU_004G171600g
TrEMBLV7C7L80.0V7C7L8_PHAVU; Uncharacterized protein
STRINGXP_007152922.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-97effector of transcription2