PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G169800.1
Common NamePHAVU_004G169800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 221aa    MW: 23836.4 Da    PI: 4.8929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G169800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-184898155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Phvul.004G169800.1 48 SVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALTIKG 98
                        78*****998.**********854...59*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.07E-3248108No hitNo description
PfamPF008472.3E-124898IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2248107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-3249107IPR001471AP2/ERF domain
PROSITE profilePS5103223.05149106IPR001471AP2/ERF domain
SMARTSM003801.1E-3649112IPR001471AP2/ERF domain
PRINTSPR003671.7E-105061IPR001471AP2/ERF domain
PRINTSPR003671.7E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVDPAPSSES DTTNTITSTS SPSSSSSTSK KRGRNNDNNG NSNDNKHSVY RGVRMRTWGK  60
WVSEIREPRK KNRIWLGTFA TAEMAARAHD VAALTIKGSS AILNFPELAA SLPRPASNSP  120
RDVQAAAAKA ASMEAPPRSP LSPAAAPEDD LGEIVELPPL GSSFDSPDPN TEFVFLDPDE  180
GWPYPHPWCH GIYDGGYFIG DMNMVSMQQD SESMVLSLWP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2037106272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G169800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152902.11e-161hypothetical protein PHAVU_004G169800g
SwissprotQ9LYD31e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV7C7K01e-159V7C7K0_PHAVU; Uncharacterized protein
STRINGXP_007152902.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.16e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]