PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G169400.1 | ||||||||
Common Name | PHAVU_004G169400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | B3 | ||||||||
Protein Properties | Length: 158aa MW: 18121.7 Da PI: 4.8969 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.2e-11 | 78 | 138 | 25 | 84 |
TT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 25 ehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 e + + +e++++ ++d+ g ++e+ l+ + k++ yvl +GW +F++++gL + D + ++ Phvul.004G169400.1 78 EEE-DVREGIQVNVYDRGGHEFEMMLKKWVKDSNefYVLNRGWFSFCNQHGLGQEDLIALRG 138 333.446889****************7744444448*********************99883 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 7.23E-10 | 75 | 155 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-9 | 78 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-11 | 79 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.9E-9 | 81 | 139 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.755 | 87 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MAASSSNSGR GKGMVEGKKE AKEIQFNDEL QLEFILDAGI VKDCELSLPY GVQLTNDKWN 60 LFLPLLGFEE TLIGFLKEEE DVREGIQVNV YDRGGHEFEM MLKKWVKDSN EFYVLNRGWF 120 SFCNQHGLGQ EDLIALRGFR HSITDMLSFV VTFRRMR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G169400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152898.1 | 1e-113 | hypothetical protein PHAVU_004G169400g | ||||
TrEMBL | V7C400 | 1e-111 | V7C400_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152898.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21340 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 6e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G169400.1 |
Entrez Gene | 18633315 |