PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G146800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 365aa MW: 40348.4 Da PI: 7.4746 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.5 | 2.7e-32 | 194 | 247 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Phvul.004G146800.2 194 PRMRWTSSLHNRFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 247 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.13E-15 | 191 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-29 | 192 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-24 | 194 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 195 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MPQNKIFREQ SSNQIPDLSL HISLPNSAPS SICSGGDSPF DTWPQQADDD DAEGFKSHSD 60 GSIKDTQLSL ANSTSAVTAA APSEAETTWR KRNLVGLSHH RVSEAQIRLI NGIPLYIPHP 120 PCSANSAPNY SYNGAVGGVA GEPISRPQQF QYFDYPQQQF GNSTNFGASE FPNGFVRSRM 180 LPRQQSNKRN MRAPRMRWTS SLHNRFVHAV QLLGGHERAT PKSVLELMDV KDLTLAHVKS 240 HLQMYRTVKN TDKPAASSDG DEDFMSLTVP NNQNKNFLPN QRGASMDCDM GYTSSNLWAN 300 SSTSRGARIQ ASSLDLDKLS HQEILSSQHN SEGNNYTQTR SFKDQNPSLE FSLGRSTWHN 360 NEHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 195 | 249 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 195 | 249 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 195 | 249 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 195 | 249 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G146800.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 2e-84 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152640.1 | 0.0 | hypothetical protein PHAVU_004G1468001g, partial | ||||
Swissprot | Q93WJ9 | 5e-48 | KAN1_ARATH; Transcription repressor KAN1 | ||||
TrEMBL | V7C3D3 | 0.0 | V7C3D3_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007152641.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 2e-50 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G146800.2 |