PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G123500.1 | ||||||||
Common Name | PHAVU_004G123500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24292.6 Da PI: 9.0994 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+nrqvtfskRr g+lKKA+ELSvLCdaeva+iifss gkl+ yss Phvul.004G123500.1 9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSPGKLFQYSS 59 69***********************************************96 PP | |||||||
2 | K-box | 72.5 | 1.2e-24 | 74 | 172 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 y k ++ + +e +++s+++e+ kL++++e+L+r+qRh++Ge+Le+Ls+keLq+Le+qL+ l R+++++ l++ +el++k ++l++ n Phvul.004G123500.1 74 YSKLQTGDSSELESQSSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKVRKLEDLN 164 567788889999******************************************************************************* PP K-box 92 kaLrkkle 99 k+L++k + Phvul.004G123500.1 165 KQLESKEK 172 ***99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.216 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.17E-39 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-19 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.567 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSS PGKLFQYSST 60 DINKIVERYR QCRYSKLQTG DSSELESQSS YHEFLKLRAK YESLERTQRH FQGEELEPLS 120 FKELQSLEKQ LDITLALTRQ QQTKKLMARA DELREKVRKL EDLNKQLESK EKDEFSSLIL 180 DNNNFFQLHA TKADQFESGT TLDTCKNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-24 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-24 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 2e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G123500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093681 | 0.0 | BT093681.1 Soybean clone JCVI-FLGm-14A18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152361.1 | 1e-149 | hypothetical protein PHAVU_004G123500g | ||||
Swissprot | Q6EU39 | 8e-67 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | V7C4Z6 | 1e-148 | V7C4Z6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152361.1 | 1e-149 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13223 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-60 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G123500.1 |
Entrez Gene | 18632831 |