PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G122600.1
Common NamePHAVU_004G122600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 425aa    MW: 46083 Da    PI: 7.7566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G122600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09100121426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+++ + G C+yG+rCkF H+
  Phvul.004G122600.1 100 KVCNYWIQ-GNCSYGERCKFLHS 121
                         68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.3381844IPR000571Zinc finger, CCCH-type
SMARTSM003560.212043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.39997123IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-698122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-798121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-7100120IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6100121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.2E-51121415IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-6127166IPR001680WD40 repeat
SuperFamilySSF509785.58E-51128416IPR017986WD40-repeat-containing domain
PfamPF004009.8E-5130166IPR001680WD40 repeat
PROSITE profilePS5029423.809134423IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.652134175IPR001680WD40 repeat
PRINTSPR003201.9E-6153167IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780153167IPR019775WD40 repeat, conserved site
SMARTSM003200.54206243IPR001680WD40 repeat
SMARTSM003209.3E-4250287IPR001680WD40 repeat
PfamPF004000.0025254287IPR001680WD40 repeat
PROSITE profilePS5008212.881257296IPR001680WD40 repeat
PRINTSPR003201.9E-6274288IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780274288IPR019775WD40 repeat, conserved site
SMARTSM003201.3E-4290327IPR001680WD40 repeat
PfamPF004000.0023292326IPR001680WD40 repeat
PRINTSPR003201.9E-6314328IPR020472G-protein beta WD-40 repeat
SMARTSM003200.6331374IPR001680WD40 repeat
SMARTSM003203.5377414IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDVDGGSKRV YNRLGGDAKH QKVCFHWQAG KCNRYPCPFL HSELPASSHA NGASSKRAHD  60
NSGLSGFSGQ RGRSNFNNSW GRGGGRGGGG GRGVVVKAEK VCNYWIQGNC SYGERCKFLH  120
SWRVGDGFSL LTQLEGHQKA VSAIAFPSGS DKLYTGSTDE TARIWDCQSG KCVGVINLGG  180
EVGCMISEGP WVFVGIPNFV KAWNTQNLVE LSLNGPVGQV YALVVNNDML FAGTQDGSIL  240
VWKFNVGNNC FEPAASLKGH SRGVVSLVVG ASRLYSGSMD NTIKVWNLET LQCIQTLTEH  300
TSVVMSVLCW DQFLLSCSLD KTVKVWYATE SGNLEVTYTH NEEHGILTLC GMHDSQGKPI  360
LLCACNDNTV RLYDLPSFAE RGKILTKQEV RAIQMGPNGI FFTGDGTGEV RVWNWTAEAT  420
TTVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-251224141323Tako8
6g6n_A1e-251224141323Tako8
6g6n_B1e-251224141323Tako8
6g6n_C1e-251224141323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18191RGGGRGGGGGR
28390GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G122600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152351.10.0hypothetical protein PHAVU_004G122600g
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLV7C4Y60.0V7C4Y6_PHAVU; Uncharacterized protein
STRINGXP_007152351.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1