PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G116500.1
Common NamePHAVU_004G116500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 290aa    MW: 32868.5 Da    PI: 6.7933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G116500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd +l   + ++G g+W++++ + g+ R +k+c++rw +yl
  Phvul.004G116500.1 15 KGLWSPEEDNKLRSHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                        678*******************************************97 PP
2Myb_DNA-binding51.22.9e-1668113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++ E++ +  ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Phvul.004G116500.1  68 RGDFSKHEEDTIRTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                         899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-22965IPR009057Homeodomain-like
PROSITE profilePS5129416.5541062IPR017930Myb domain
SuperFamilySSF466894.77E-2813109IPR009057Homeodomain-like
SMARTSM007171.1E-101464IPR001005SANT/Myb domain
PfamPF002494.4E-131562IPR001005SANT/Myb domain
CDDcd001672.06E-91862No hitNo description
PROSITE profilePS5129425.16863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2566117IPR009057Homeodomain-like
SMARTSM007171.7E-1567115IPR001005SANT/Myb domain
PfamPF002495.0E-1568113IPR001005SANT/Myb domain
CDDcd001672.09E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MENQPLEKAK PKYRKGLWSP EEDNKLRSHI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGD FSKHEEDTIR TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVMKA  120
KETESDKQIQ HASSSSDSVD NSLSPQKLAI QDPSYALLQN MEKTATHSDN FFSHSYDFSQ  180
EACQSSLPKL LFSEWLLEDQ VNGAGSVNSD DSLVLGNVFD QNSSFQEAIM HLLEGNFGEE  240
YHNSLIQSST TDVYNSQLKT SNQVDGDDFL HCIPGNDLCS NFSLTNHAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G116500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152283.10.0hypothetical protein PHAVU_004G116500g
SwissprotQ9M0K41e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLV7C2990.0V7C299_PHAVU; Uncharacterized protein
STRINGXP_007152283.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-60myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]