PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G113400.1
Common NamePHAVU_004G113400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 673aa    MW: 75816.8 Da    PI: 5.2728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G113400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157292323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C +C++ F ++ n++rHir+H
  Phvul.004G113400.1 72 CDKCSREFCSPINYRRHIRVH 92
                        ********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8687097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MPIAKLKSSS TPDVMDAEEK IDTIIRQTIG RETSLSFPSV NDNSIHWIEL FNALDSQGWP  60
LLYPMKVQLQ NCDKCSREFC SPINYRRHIR VHHRLKKLDK DFTKTRDLLG AYWDKLSVEE  120
AKEVVSLENV VLEKVPGSSI LKSLTTLLQN QGFYAFPRYY LMAGAALLDI VQSKSSSFPI  180
SSEELFSVLD NASEKTCLCG TAESVKRYVF DGNAGKIGLE PKNLVACTSF LLEQKLVMAW  240
LTDKDAEALK CQEQLVEEEE AAQKRQTEIL ERKRQKKLRQ KEQKAREQRH KAEAEIEGDI  300
DSTVKALSLT EASSDTYNFE ARNPNVFSDN VSSPVLLQYL DTNEEINGDT HSEYDTIPDQ  360
NLERWSAHGH MGKWAEANDL LTNQISPLSK LEVNQKYEAN HDNKASAIVS GSQVWSPKSE  420
EEIDKVVLKT TKEKEPDQLK NQEVLIGSIS VNLDDDCRQS EGNMLASERD SMVENVGKQN  480
SSRDKLMKTD RVTSGNSLSI VKVWRPVSRL ETEDQVPVQS GETDDDDSVH GNVRNWSVPS  540
CLREGSTDGD DIGFEKHFSH PEGRAYPGSF QFSIQDAKAF LAKRWEEAIS SDHVTLHLTS  600
DSESSGSQET QDSITEASQS YDEDRRNIVA NADNKLPATS RIAKPKRRLK KSEKGIKIKY  660
VPKQKRNNLC DI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270277ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G113400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-107AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152241.10.0hypothetical protein PHAVU_004G113400g
TrEMBLV7C4P20.0V7C4P2_PHAVU; Uncharacterized protein
STRINGXP_007152241.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-107C2H2-like zinc finger protein