PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G092100.1
Common NamePHAVU_004G092100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 436aa    MW: 46732.2 Da    PI: 6.8726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G092100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20215264255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+t+e Aa+a+++a+++++g
  Phvul.004G092100.1 215 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 264
                         8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-33214273IPR001471AP2/ERF domain
SMARTSM003804.6E-38215278IPR001471AP2/ERF domain
PROSITE profilePS5103225.791215272IPR001471AP2/ERF domain
PfamPF008471.8E-14215264IPR001471AP2/ERF domain
CDDcd000185.80E-22215274No hitNo description
SuperFamilySSF541719.15E-23215273IPR016177DNA-binding domain
PRINTSPR003674.5E-11216227IPR001471AP2/ERF domain
PRINTSPR003674.5E-11238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSLLTVAYQR GSGEFIQFTA DHGGGDDGEH GYGDGGGGSG SGGGGSPGLN FNQGMQQQGE  60
VAMQGGSLVS GYNRGDPELR EMVSALTHVV SSGSGQRSTE WMQQSGYSMM SGFGHAPSLS  120
RLSSFSSPSP TSGPSGVGQK RGREEQQTNT SSSHNLMQQQ SAPRLFRTVG DFMLPSQGDS  180
SSVTEEAPTS TTTTVTAVTT AVTETTPGGG ERRRKYRGVR QRPWGKWAAE IRDPHKAARV  240
WLGTFDTEEA AARAYDEAAL RFRGNRAKLN FPENVRAVPP LQPFQAATRL TVSDSSTSQF  300
RPLTVAAPPF VQQPQMQGSS DLIRDYLQYS QLLQTDFQHQ HQHQHQQQPS NFLQQLYYNA  360
QLASLQSPSF SSSVSPTPLP LFSTSAQFSS ASFPMFSSQQ MSYFQPLESL PPAGGRPDIP  420
PSTWSDAGGQ PPSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22214275163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215ERRRKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G092100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151985.10.0hypothetical protein PHAVU_004G092100g
TrEMBLV7C1F70.0V7C1F7_PHAVU; Uncharacterized protein
STRINGXP_007151985.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-29ethylene response factor 110