PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G083100.1
Common NamePHAVU_004G083100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 337aa    MW: 36453.7 Da    PI: 5.8693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G083100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.8e-18242275134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Phvul.004G083100.1 242 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 275
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.2E-762330IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.82236272IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-17236286IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.1E-15240273IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-15240299No hitNo description
CDDcd002027.73E-15241288No hitNo description
PfamPF003204.6E-16242275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIGNFIDDID CGSFFDQIDD LLEFPAEETA AIDTTAVAPL APPTNFWSAE SDSFHAANAV  60
FSGNTVPDLS TELSVPYEDI VQLEWLSNFV EDSFSGGSLT MQQEQPQCTN KEDITHAQFQ  120
TASPVSVLES SSFCSGEKAV PRSPEIFIPV PCGRARSKRA RPTAFNPHPV MQLISPASST  180
GENTQHNTST CKASSDSENF AESPIKTPKQ AFGEHKKKKK IKVTFSAGQD QNGSPSQAVR  240
KCVHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFCA AVHSNSHKKV  300
LEMRNKSDTK SGFAADSASS PELIPNTNSS LSLEYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G083100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151876.10.0hypothetical protein PHAVU_004G083100g
TrEMBLV7C3K30.0V7C3K3_PHAVU; GATA transcription factor
STRINGXP_007151876.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-47GATA transcription factor 9