PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G042400.1 | ||||||||
Common Name | PHAVU_004G042400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 126aa MW: 14617.1 Da PI: 10.5853 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.7 | 1.1e-26 | 69 | 119 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f +gkl+eyss Phvul.004G042400.1 69 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 119 78***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.025 | 61 | 121 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-34 | 61 | 120 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.28E-27 | 62 | 121 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.72E-32 | 62 | 121 | No hit | No description |
PRINTS | PR00404 | 1.7E-28 | 63 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 63 | 117 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-24 | 71 | 117 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-28 | 83 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-28 | 98 | 119 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MLACACKEGD PTTSNYLHFR TVLAHHKYRK IPCYYIPQFI THSTHFLFSF HLFFSFLSFK 60 MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE 120 SRFVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 61 | 119 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G042400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 3e-78 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151390.1 | 8e-89 | hypothetical protein PHAVU_004G042400g | ||||
TrEMBL | V7BZR4 | 2e-87 | V7BZR4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151390.1 | 3e-88 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 6e-31 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G042400.1 |
Entrez Gene | 18631982 |