PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G291800.1

Common Name

PHAVU_003G291800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 409aa MW: 45387.7 Da PI: 10.2853

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G291800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.8	1.2e-13	328	381	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ + e+k++ ++ Phvul.003G291800.1 328 RRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEINRELQRKQAEIKEMQKN 381 79***************************************9999999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-10	324	391	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	326	377	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-11	328	382	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.6E-14	328	378	No hit	No description
SuperFamily	SSF57959	7.74E-10	328	377	No hit	No description
CDD	cd14707	2.29E-25	328	382	No hit	No description
PROSITE pattern	PS00036	0	331	346	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MNFRNYDDNN STWDAIHGKT PANVGSLLRQ SSVYSLTFDE FQSTMEGIGK EFGSMNMDEL 60 LKNIWTAEET QALAFSAGTG EGHNHNPVSG GLQRQGFLTL PRTLSQKTVD EVWRDFIKDS 120 GGANDGSGNG GSSIPQRQPT LGEMTLEEFL VRAGVVREDV PQQQIGKPNN NGWFGDFPRP 180 NNNNGLLLGF QQPNRSNRNL GERVVENNNN NLAPKQPPLS LNSNHSQRPT QQQPPLFPKP 240 SNVAFSAPMH LLNTAPHPSP ARRGGLMEHS LNVGMVGLAS ANPEASPSRK ISSDVISRSN 300 VDNSSLSPVH YAINRGRKCS AIEKVVERRQ RRMIKNRESA ARSRARKQAY TFELEAEVAK 360 LKEINRELQR KQAEIKEMQK NKQDLDPACQ SRVSSRIQCL RRTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MNFRNYDDNN STWDAIHGKT PANVGSLLRQ SSVYSLTFDE FQSTMEGIGK EFGSMNMDEL  60
LKNIWTAEET QALAFSAGTG EGHNHNPVSG GLQRQGFLTL PRTLSQKTVD EVWRDFIKDS  120
GGANDGSGNG GSSIPQRQPT LGEMTLEEFL VRAGVVREDV PQQQIGKPNN NGWFGDFPRP  180
NNNNGLLLGF QQPNRSNRNL GERVVENNNN NLAPKQPPLS LNSNHSQRPT QQQPPLFPKP  240
SNVAFSAPMH LLNTAPHPSP ARRGGLMEHS LNVGMVGLAS ANPEASPSRK ISSDVISRSN  300
VDNSSLSPVH YAINRGRKCS AIEKVVERRQ RRMIKNRESA ARSRARKQAY TFELEAEVAK  360
LKEINRELQR KQAEIKEMQK NKQDLDPACQ SRVSSRIQCL RRTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G291800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156508.1	0.0	hypothetical protein PHAVU_003G291800g
Swissprot	Q9M7Q4	3e-98	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	V7CE69	0.0	V7CE69_PHAVU; Uncharacterized protein
STRING	XP_007156508.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	4e-97	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Phvul.003G291800.1
Entrez Gene	18636417

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]